Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02386 ATGGGTTTCGTGTTTGGGTTGGTGGTGGGGGTAGTGGTGGGGCTCGCCGTCATCGTCGGATTCGTCCGCTCAGAGAATGCTCGCTCCAAGCAGCGATCTCAGCTCGCCGCCACCATCGCCGCCTTCGCCAGGATGTCCGTCGAAGATTCCAGAAAGCTCCTCCCGCCTCAGTTCTACCCTTCTTGGGTCGTCTTCTCCAACCGCCAGAAGTTATGCTCTCTCTTCTTGTTCTTAACGTGGCTCAACTCGCATCTTACTAAGATCTGGCCCTATGTTAATGAAGCTGCTTCTGAGCTCATAAAGATGTCGGTGGAACCGATTCTAGAACAATACAGACCTATTATATTGGCTTCTCTCAAGTTTTCCAAGTTTACTCTTGGCACTGTTGCACCACAGTTTACAGGGGTTTCTATAATTGAAGATGGAGGGGATGGTGTTACAATGGAGTTGGAAATGCAGTGGGATGGCAATCCAAGCATTATACTTGATATTAAAACTCTGCTTGGTGTTGCACTACCAGTGCAGGTAAAAAATATAGGATTTACAGGTGTTTTCAGATTGATTTTTAAGCCACTAGTTGATGAATTTCCTGGTTTTGGAGCCATTAGCTATTCTTTAAGACACAAGAAAAACTTGGATTTTACGTTGAAAGTCGTTGGCGGTGACATATCAGCAATCCCTGGATTATACGATGCAATTGAGGGGGCAATTCGGGATGCTGTTGAAGATTCTATTACATGGCCTGTGAGAAAAGTTGTAACTATCTTGCCTGGAGACTACAGTGATCTGGAGTTGAAGCCTGTCGGGATATTAGAGGTAAAGCTTGTGCAAGCAAGGGAATTGACAAACAAGGATATCATTGGGAAATCGGATCCATATGCTGTCTTATACATACGGCCTTTACGTGACAGAATGAAGACTAGCAAGACAATTCTTAGTGAACTTGAGCCTGGTAAAGTTAACGATAAGTGGTTGAAGTTGGTTAAGGATTTGGAGATCCAAAGAGATAACAAGAACAGAGGGCAGGTACATTTGGAGCTTTTGTACATTCCTTTTGGCATGGAGAATAGCTTTACCAACCCATTTGCTCCCAAGTACTCAATGACATCCTTGGAAAAGGTTCTCAAAAGTTCAACAAATGGAATAGAGTCTAATGGAAATGAAAATGAATTTACACAGAAGAGAAAGGAGGTTATTATTAGAGGAGTCCTTTCTGTTACAGTGATATCTGCTGAAGATTTGCCTGCAACCGATCTCCTGGGGAAATCTGATCCTTTTGTTGTTCTTAGTTTGAAGAAAGCAGAAACTAAAAATAAAACCAGGGTTGTCAATGACTGCTTGAATCCTGTTTGGAATCAAACATTTGACTTCGTCGTTGAGGATGGATTACATGATATGCTAATGGTGGAAGTGTATGACCATGACACATTCGGAAAGGATTATATGGGAAGATGCATATTGACGCTTACTAGGGTCATATTGGAGGGGGAATACAAAGAACGTTTTGAGCTTGAAGGTGCAAAATCTGGTTATTTGAATTTGCATCTCAAGTGGATGCCTCAACCAATTTACCGTGATTCTTGA 1584 0.4255 MGFVFGLVVGVVVGLAVIVGFVRSENARSKQRSQLAATIAAFARMSVEDSRKLLPPQFYPSWVVFSNRQKLCSLFLFLTWLNSHLTKIWPYVNEAASELIKMSVEPILEQYRPIILASLKFSKFTLGTVAPQFTGVSIIEDGGDGVTMELEMQWDGNPSIILDIKTLLGVALPVQVKNIGFTGVFRLIFKPLVDEFPGFGAISYSLRHKKNLDFTLKVVGGDISAIPGLYDAIEGAIRDAVEDSITWPVRKVVTILPGDYSDLELKPVGILEVKLVQARELTNKDIIGKSDPYAVLYIRPLRDRMKTSKTILSELEPGKVNDKWLKLVKDLEIQRDNKNRGQVHLELLYIPFGMENSFTNPFAPKYSMTSLEKVLKSSTNGIESNGNENEFTQKRKEVIIRGVLSVTVISAEDLPATDLLGKSDPFVVLSLKKAETKNKTRVVNDCLNPVWNQTFDFVVEDGLHDMLMVEVYDHDTFGKDYMGRCILTLTRVILEGEYKERFELEGAKSGYLNLHLKWMPQPIYRDS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02386 527 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 79 254 IPR039010 -
Adu01g02386 527 Gene3D C2 domain 385 520 IPR035892 -
Adu01g02386 527 SMART C2_3c 403 501 IPR000008 -
Adu01g02386 527 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 315 IPR045050 GO:0008289
Adu01g02386 527 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 312 527 IPR045050 GO:0008289
Adu01g02386 527 Gene3D C2 domain 266 318 IPR035892 -
Adu01g02386 527 Pfam C2 domain 402 502 IPR000008 -
Adu01g02386 527 Pfam C2 domain 269 317 IPR000008 -
Adu01g02386 527 CDD C2 404 501 - -
Adu01g02386 527 PANTHER SYNAPTOTAGMIN-5-LIKE 312 527 - -
Adu01g02386 527 PRINTS C2 domain signature 419 431 IPR000008 -
Adu01g02386 527 PRINTS C2 domain signature 467 475 IPR000008 -
Adu01g02386 527 PRINTS C2 domain signature 445 458 IPR000008 -
Adu01g02386 527 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 74 256 IPR031468 GO:0008289
Adu01g02386 527 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 267 317 IPR035892 -
Adu01g02386 527 ProSiteProfiles C2 domain profile. 385 502 IPR000008 -
Adu01g02386 527 PANTHER SYNAPTOTAGMIN-5-LIKE 1 315 - -
Adu01g02386 527 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 399 521 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02386 Adu-Chr1 91325462 91329687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02386 402 520 C2H2 Transcription Factor Family AT4G05330 28.481 9.93e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02386 - - gmx:100797374 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02386 01 91325462 91329687 Adu01g02386 01 91325462 91329687 ECH