Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02350 ATGGGTTCCGCCACCAGTAGACTAGACGGTTCTCGCCCTCCCACGGCGAGGCTCAACCGCAACAACACACGCTTCAGCCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTTAGCAACAGAACCTGATGGTGGAACTCAGGAAATCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATCAGCTGCAGCCACCATGCTGAAGCCGCTACCTCATCCAATACAAGAACCGAGTCTCATCAGCATATTGGTATTGAAGGTTCTTCCATAAATGTTGCAGCAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTGGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAATACAGCTAGTACTTCTTTTGTAGAGCAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCTCATGAGACAGTGCATCCATGGAGTTCGAGCCCTCAGGAGAATGGATATTTTAGTTCTGGGGAAATTTCTGTTGAGAATGATGCATTAATGGCTACCCAGAGTCCTTCTTCGGATCCCGTTTCTCAAGTTTCCACTTTACCGGCACCTTCTCCTATGCCCGAAGATGAACCTCGCAGAGAGGCAATACCTTCAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAGTGTGCTTCAAGTTGATGTTGTCACAATATCCTCCAACATCTTGTCTGGCAGCACTGCTGATGCCAATGATCATGATACCGGAAGGAGTGGTAGAAGAATATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTGTTCTCTGCTGGCGGTGCCGATGATCCTAGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCCAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTGGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCACTCAAGATCAGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAGCAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATTGTCATGCTGGCTGAAGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTCGATGCAGCTGACGGTGGCAGTGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATTCGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGCGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGCCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTACCAACTCAGTGCCATCTCATTGA 1533 0.4488 MGSATSRLDGSRPPTARLNRNNTRFSLSSLLCGASTSRSTYQMEEHPSELQVDLATEPDGGTQEITEESSLSCTEARISCSHHAEAATSSNTRTESHQHIGIEGSSINVAASSQRKCLSECKELVPPHQVSAGHSGNESYRDSSNTASTSFVEQQSSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVHPWSSSPQENGYFSSGEISVENDALMATQSPSSDPVSQVSTLPAPSPMPEDEPRREAIPSGXXXXXXXXXXXDSVLQVDVVTISSNILSGSTADANDHDTGRSGRRIFWDAFSRRSSRRLGDSQTIVFSAGGADDPRSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPAAEESSTRASISRIVMLAEALFEVLDEIHRQPVDAADGGSDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSTNSVPSH 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02350 510 MobiDBLite consensus disorder prediction 132 170 - -
Adu01g02350 510 MobiDBLite consensus disorder prediction 38 70 - -
Adu01g02350 510 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 438 - -
Adu01g02350 510 SMART ring_2 450 491 IPR001841 -
Adu01g02350 510 SUPERFAMILY RING/U-box 449 495 - -
Adu01g02350 510 ProSiteProfiles Zinc finger RING-type profile. 450 492 IPR001841 -
Adu01g02350 510 Pfam Ring finger domain 449 492 IPR001841 -
Adu01g02350 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 497 IPR013083 -
Adu01g02350 510 MobiDBLite consensus disorder prediction 177 234 - -
Adu01g02350 510 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 439 506 - -
Adu01g02350 510 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 438 - -
Adu01g02350 510 MobiDBLite consensus disorder prediction 1 22 - -
Adu01g02350 510 CDD mRING-H2-C3H2C2D_ZSWM2 449 492 - -
Adu01g02350 510 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 439 506 - -
Adu01g02350 510 MobiDBLite consensus disorder prediction 127 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02350 Adu-Chr1 90997231 91000143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02350 391 496 C3H Transcription Factor Family AT5G45290 48.252 1.51e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02350 - - gmx:100783604 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02350 01 90997231 91000143 Adu01g02350 01 90997231 91000143 ECH