Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02332 ATGCCGGACGGAGAATCCTCTTCCGCCACGTCATCGCCGGAGCTGGAGCCCCATTTAAGCGTCGCTGAATACTTGCTGCAGAACCTTAGTCTCTCTGAAGTCAAAGATCATGACGACCAAGCTGTTCAGAAAGACCCCAGAAAAATTGCCAGAAGGTACCAGTTGGAGCTGTGCAAAAAAGCATTAGAAGAAAATATAATTGTATATTTGGGGACTGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGCGATGGGTCATTTGATAAGGAAGCCCCAGAAAAATATATGTATTTTTCTTGCCCCTACTGTGGCGCTTGTTCATCAGCAAGCGAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGACTTTCTGTGGGAGCTCCAAGCGCTTGAAACGTCATCATGATTGGGAGCAGGAAATTGGACAGTATGAGGTTCTTGTCATGACCCCCCAGATATTATTGCACAACTTATCTCATTGTTCCATTAGGATGGACATGATTTCACTTTTGATATTTGATGAATGTCATCATGCTCAAGCCAAAAGCTCCCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAGTTTCAAAAGTGTTCCCCGTATTTTCGGCATGACTGCTTCCCCAGTTGTAGGAAAAGGGGCTTCCAATGAAGCAAATCTATCAAAAAGCATCAATAGTCTTGAACAAATACTTGATGCTAAGGTATACTCAGTTGAAGACAGGGAATTGCAATCTTTTGTGACCAATGCAACAATTTCTGTATATCATTATAGCTCAGTTGCAAATGGAACAGATAGCTTGTATACAACTTACCATGCAGATCTTGATCTGATCAAATATCAGCAGTGCATAGCAAGCCTCGGTAGGAATGTAGAAGATCACCAGAAACGGGTGAACACAAAAAAACTTCTAAACAGGATACATGAGAATGTTGTTTTCTGTCTGAGGAATATTGGCATTTGGGGAGGACTGCAAGCTAGTCATATTCTTTTGAGGGGCGATCGTTCCGAGAGGCATGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGATAAATATCTATCTCAGGCAGCTGAACTCTTTAACTCACGTCTGAAAGGTGACGGTGTATCTGATTTATCTTCTATGGAAATAATGAGAGAGCCCTTTTTCTCATCAAAACTTTTGCGCCTCGTTCAGATACTGTCCTCCTTTAGGATGCAACAGAACCCAAAATGTATCATTTTTGTTAATAGAATCGTGACTGCAAGATCCCTGTCATACATACTTAAGAAGATGAAACTTCTAACACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGATTGAAGAGTATGTCACGCAAGACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGTGAGTTGAATCTATTGGTTGCAACAAAAGTGGGTGAAGAAGGACTTGACATTCAAACTTGTTGCCTTGTCATACGGTTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGACAATAAGAAGGATCTCGATTTAATTGATGGTTTTGAGAAAGATGAATGCCGCATGAATATGGAAATTGCTGACCGTACATCAACTGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTAGATTCGTCTGGTGCTTCTGTCAGTTCTGGATATAGTATTTCATTACTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCAAGCTTTTATTACTTTGATGAAAAAGATGGGATAGTCTGCCACATAATATTTCCATCCAATGCACCAATACACTTAATTGTCAGTTCACCACAGTTGTCTATGGAAGCTTCCAAAAAGGATGCTTGCCTGAAAGCAATTCAAGAACTGTATGAAAAAGGTTCGTTAAGTGATTGTCTTTTGCCAAAGCAAGAGACCACAGAGCCAGAGGAGAAGGATTCAAGCCCATCTAATACAGATGGTTGTGAAGATGACAAGTCAAGAGGAGAATTACATCAGATGTTAGTTCCTTCTCCCTTTAGAAAGTCTTGGATAAACGAAGAGAAAATTGTTCATCTCAACTCATACTACATAAAATTTCGCCCCTTTCCAGAGGATAGGGTTTACAAAAAGTTTGGTCTATTCATCATGACATGTCTTCCAGCAGAGGCTGAGAAACTGGAACTTGATCTTCATCTTGCTCATGGTAGATCTGTTAAATCAACATTTGTTCCATTTGGAGTTGTAGAATTCGACAAAGATGAGATTAAGATGGCTGAACATTTTCAAGAGATGTTCCTTAAAACTATTCTTGACCGATCAGAATTTGTTTCTGATCTTGTAACCCTGGGTAAAGGTGCTGAATCTCACAATGATTCATCAACCTTCTACCTTATGCTTCCAGTTGTATTGCAAGAATATGAAAATATTATGACTGTGGATTGGAAGACTGTGAGAAGATGCCTTTGTTCACCAATTTTCAAGTCTCCACCAGATGCTGTGGACCAAAAGCCTTGTCCTTCTGATTCATCACTTCAACTTGCCAATGGTAAAAGAAGCATAAGAGATGTTGAAAATAGTTTGGTATATGCCACACACAAAAAGCTCTTCTATTTTGTCACAAATGTGAACCATGAAAAGAATGGATTAAGTCCCAGTAAAGATTCAGGCACTTCAAGCTATGCGGATGACTTACTTGAAAAGTTTAGTATTCATCTCAAACACCCAGAACAGCGACTGCTGCATGCAAAACCAGTTTTCAATCTGCACAACCTGCTGCATAATCGGAAGTATGAGGATACAGAGCCACAGGAGCTGGAGGAGTTCTTTGTTGATTTGCCTCCTGAGCTTTGCGAACTGAAAGTTGTGGGTTTTTCGAAGGATATGGGTAGTTCCATATCTTTGCTACCCTCAGTTATGCATCGTCTTGGAAACTTACTGGTTGCTATTGAACTCAAGCAAATGCTGTCTCGATTCTTCCCAGAGGCAGCTGAAATTAACTCCCATACAATTCTTGAAGCTCTCACAACTGAGAAGTGTCAGGAACGGTTTTCGCTTGAAAGACTAGAAGTGCTTGGAGATGCTTTTCTCAAATTTGCTGTTGCACGCCATTTTTTCCTCACATATGACAGTCTTCATGAAGGAGACCTTACTGCAAGGCGTTCTAATGTTGTAAATAATTCCAATTTGTATAAGTTGGCTCTTAAACGCAATTTGCAGGTCTATATACGTGATCAGGCGTTTGATCCCTGTCAATTCTACGCATTTGGCCGTCCTTGCCCAATAGTTTGCAACAATGAAATGGAAGAAAGTATACACTCATGTTTAAATTCTGTTAAGGAGCAAGGAAGCTCAACTGAAATCCAGTGCAATAAAAATCACCACTGGCTATATAGAAAAACAATTGCTGATGCAGTTGAAGCTTTGGTTGGAGCATTTATAGTTGACAGTGGCTTTAAAGCTGCAATTGCATTTCTTACGTGGCTTGGCATACAAGTTGGTTTTGAAGCCTCACAATTGATTAATGTTTGCCGAGGAAGTGTTGGCTATATTCCTCTCTCTGCTGATGTAAACATTCTTTCCCTCGAAGATAAGTTGGGATATCACTTCATTCATAAGGGTCTGCTTCTTCAGGCATTTGTGCATCCTTCTTACAATAAGCATGGAGGAGGTTGCTACCAGGCAAGGCTCCTTTACTATGCTGTGCTGGATTTTTTGATTACTTCATACCTGTACTCAGCTTATCCCAAGCTAAAGCCTGGTCAATTGACGGATTTGAGATCGTTGTCTGTTAACAATAAGGCATTTGCCTGTGTTGCTGTGGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCTAGCAACCTTTCTGAGGCAGTAAAAAAGTATGTGGACTATATTAGAAGACCTTTATCAAGTAATGTCAATGAAGGGCCGAAATGTCCAAAGGCTTTGGGTGACTTGGTGGAATCTTGTGTTGGTGCTATTCTTCTTGATTCAGGGTTCAATTTGTACAAAGTTTGGGAAATAATGACTTCATTCTTGGATCCAATCATGAAATTCTCATCTAACTTGCAGCTTAGTCCCAAGAGGGATCTGCAAGAACTATGCCAATCTCATAATTTGGACTTGCAACTCCAACCATCAAAATTGACTAAAATGTTTTCAGTTGAAGCAAAAGTGATTGTGAATGGTACATGTCAAACAGCAGTGGCAACCGGGCAAAGTAAAAAAGAGGCTACTAGAATTGCTTCACAGAAACTATTTTCAGAGCTAAAGGCTCAAGGCTGGAGACCAAGGTCAAAACCTTTGGAAGAAGTTTTAAAATCTACCTTTAAGGGGGAAGCAAAACTTATTGGCTATAATGAAACTCCCATTGATGTAACAGCAATTAATTCCATTGAGCACGTGATGGTTAATGGGAACTTAAGTAGCAACTCAAACCCGATAATTCGCCCCCTCCGTGAGGTGATTGGTATAAAACCTGTTGACCAAAAGGTTCAACATTCTTCTAAGGGACAGCCTAGTGGAACTTATGATAATCGTGATTGTGCCGGTGATTTATCGAGGACAGGAACCGCAAGATCACGATTGTATGAATTCTGTACTGCTTCTTGCTGGAAACCACCGACATTTGAGTGCTGCTATGAAGGGGGACCAGATCACATGAAGTTATTCACATACAAGGTGACCTTGGACATAGAAGAATCCCCAGATGTGATTTATGAATTCATTGGGGAACCAAAACCGAAGAAGAAAGACGCAGCAGAGTCCGCGGCTGAGGGTGTGTTTTGGTACCTGGAACGCACAGGTCATTCCAAAATCCTGAATGAGACACGGCCTACTCTGTTGTTGGTCAAAAAGGAACTTATGAGTGAGGGTGTGTTTTGGTACCTGGAACACGCAGGTTACCTGCCTAATAAGCGTAACTGA 4998 0.4074 MPDGESSSATSSPELEPHLSVAEYLLQNLSLSEVKDHDDQAVQKDPRKIARRYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHAMGHLIRKPQKNICIFLAPTVALVHQQAKVIEDSTDFKVGTFCGSSKRLKRHHDWEQEIGQYEVLVMTPQILLHNLSHCSIRMDMISLLIFDECHHAQAKSSHPYAEIMKVFYKNSFKSVPRIFGMTASPVVGKGASNEANLSKSINSLEQILDAKVYSVEDRELQSFVTNATISVYHYSSVANGTDSLYTTYHADLDLIKYQQCIASLGRNVEDHQKRVNTKKLLNRIHENVVFCLRNIGIWGGLQASHILLRGDRSERHELVEAEGNSSDDSVCDKYLSQAAELFNSRLKGDGVSDLSSMEIMREPFFSSKLLRLVQILSSFRMQQNPKCIIFVNRIVTARSLSYILKKMKLLTQWRSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSDNKKDLDLIDGFEKDECRMNMEIADRTSTETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPSFYYFDEKDGIVCHIIFPSNAPIHLIVSSPQLSMEASKKDACLKAIQELYEKGSLSDCLLPKQETTEPEEKDSSPSNTDGCEDDKSRGELHQMLVPSPFRKSWINEEKIVHLNSYYIKFRPFPEDRVYKKFGLFIMTCLPAEAEKLELDLHLAHGRSVKSTFVPFGVVEFDKDEIKMAEHFQEMFLKTILDRSEFVSDLVTLGKGAESHNDSSTFYLMLPVVLQEYENIMTVDWKTVRRCLCSPIFKSPPDAVDQKPCPSDSSLQLANGKRSIRDVENSLVYATHKKLFYFVTNVNHEKNGLSPSKDSGTSSYADDLLEKFSIHLKHPEQRLLHAKPVFNLHNLLHNRKYEDTEPQELEEFFVDLPPELCELKVVGFSKDMGSSISLLPSVMHRLGNLLVAIELKQMLSRFFPEAAEINSHTILEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLTYDSLHEGDLTARRSNVVNNSNLYKLALKRNLQVYIRDQAFDPCQFYAFGRPCPIVCNNEMEESIHSCLNSVKEQGSSTEIQCNKNHHWLYRKTIADAVEALVGAFIVDSGFKAAIAFLTWLGIQVGFEASQLINVCRGSVGYIPLSADVNILSLEDKLGYHFIHKGLLLQAFVHPSYNKHGGGCYQARLLYYAVLDFLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSNLSEAVKKYVDYIRRPLSSNVNEGPKCPKALGDLVESCVGAILLDSGFNLYKVWEIMTSFLDPIMKFSSNLQLSPKRDLQELCQSHNLDLQLQPSKLTKMFSVEAKVIVNGTCQTAVATGQSKKEATRIASQKLFSELKAQGWRPRSKPLEEVLKSTFKGEAKLIGYNETPIDVTAINSIEHVMVNGNLSSNSNPIIRPLREVIGIKPVDQKVQHSSKGQPSGTYDNRDCAGDLSRTGTARSRLYEFCTASCWKPPTFECCYEGGPDHMKLFTYKVTLDIEESPDVIYEFIGEPKPKKKDAAESAAEGVFWYLERTGHSKILNETRPTLLLVKKELMSEGVFWYLEHAGYLPNKRN 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02332 1665 ProSiteProfiles PAZ domain profile. 877 977 IPR003100 GO:0005515
Adu01g02332 1665 SUPERFAMILY RNase III domain-like 1212 1374 IPR036389 GO:0004525|GO:0006396
Adu01g02332 1665 Pfam PAZ domain 877 998 IPR003100 GO:0005515
Adu01g02332 1665 SUPERFAMILY dsRNA-binding domain-like 1338 1448 - -
Adu01g02332 1665 MobiDBLite consensus disorder prediction 1519 1540 - -
Adu01g02332 1665 CDD RIBOc 1026 1184 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 SMART helicmild6 428 518 IPR001650 -
Adu01g02332 1665 Pfam Ribonuclease III domain 1042 1173 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 Pfam Ribonuclease III domain 1256 1356 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 Pfam Helicase conserved C-terminal domain 398 516 IPR001650 -
Adu01g02332 1665 Gene3D paz domain 863 975 - -
Adu01g02332 1665 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Adu01g02332 1665 Gene3D - 50 291 IPR027417 -
Adu01g02332 1665 Gene3D - 1555 1625 - -
Adu01g02332 1665 Gene3D - 1384 1453 - -
Adu01g02332 1665 SMART ultradead3 46 251 IPR014001 -
Adu01g02332 1665 Gene3D Dicer dimerisation domain 578 675 IPR038248 -
Adu01g02332 1665 PANTHER DICER-RELATED 46 1625 - -
Adu01g02332 1665 Pfam Type III restriction enzyme, res subunit 57 215 IPR006935 GO:0003677|GO:0005524|GO:0016787
Adu01g02332 1665 SUPERFAMILY dsRNA-binding domain-like 1548 1628 - -
Adu01g02332 1665 CDD DSRM_DCL_plant 1555 1624 - -
Adu01g02332 1665 SUPERFAMILY RNase III domain-like 1022 1187 IPR036389 GO:0004525|GO:0006396
Adu01g02332 1665 ProSiteProfiles Ribonuclease III family domain profile. 1214 1356 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 Gene3D Ribonuclease III domain 1019 1184 IPR036389 GO:0004525|GO:0006396
Adu01g02332 1665 Gene3D - 390 552 IPR027417 -
Adu01g02332 1665 CDD RIBOc 1230 1378 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 ProSiteProfiles Ribonuclease III family domain profile. 991 1173 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 SMART PAZ_2_a_3 854 1003 IPR003100 GO:0005515
Adu01g02332 1665 CDD DEXHc_dicer 48 247 - -
Adu01g02332 1665 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1549 1623 - -
Adu01g02332 1665 SMART DRBM_3 1549 1623 IPR014720 -
Adu01g02332 1665 SMART DRBM_3 1384 1448 IPR014720 -
Adu01g02332 1665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 555 IPR001650 -
Adu01g02332 1665 MobiDBLite consensus disorder prediction 666 690 - -
Adu01g02332 1665 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1383 1449 IPR014720 -
Adu01g02332 1665 PANTHER DICER-LIKE PROTEIN 4 46 1625 - -
Adu01g02332 1665 Pfam Dicer dimerisation domain 582 668 - -
Adu01g02332 1665 Gene3D Ribonuclease III domain 1212 1383 IPR036389 GO:0004525|GO:0006396
Adu01g02332 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 531 IPR027417 -
Adu01g02332 1665 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1548 1624 IPR014720 -
Adu01g02332 1665 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Adu01g02332 1665 SMART riboneu5 1024 1193 IPR000999 GO:0004525|GO:0006396
Adu01g02332 1665 SMART riboneu5 1229 1379 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02332 Adu-Chr1 90704651 90716667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02332 416 553 Eukaryotic Initiation Factors Gene Family AT3G19760 31.915 7.20e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02332 K11592 - gmx:100818702 2488.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02332 01 90704651 90716667 Adu01g02332 01 90704651 90716667 ECH