Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02278 ATGGCTTCTTCTAGCCGTCAACAAAACGAACATTCTCCTTCTACTTCTACTGTGATTTGTTTCTTTAAGATTGTTCTCAGACAAGCTCTTCAAGATGAAGACTTTAAGTTACCAATAAAGTTCACTAAAAAATATGGTTCTGACCTATCAAATCCATTGTATCTTAAGCCTCCAGATGGTACTGAATGGAGCATAGAGTGGATTAATCATGATGGTGAAATTTTGTTTAAAAACGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTACGGTTTGGGTACAATATTGGAACATCTCACATGGAAGTACACATATTTGACATGAGTTGCCTCCAAATAGAGTATCCTGCCAATGATCAGATCAAAGAGCAGCTGCCACGCAGGGGCAGTTGGAAAATGACACACAAATCAAGGATGTGGAAAGAAGCTTTAATTCTCACTATGAAATTTAACTGGGAAAAGCCCTCATTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTATAAATAATCCACAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTGTCAAGTTGATCTATAGGCCATCATCATGTGTTGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATATTTGTTTGTTTAAGCTCATCAATAAAAAAGATCCGATGCTTGATGTTCATATTTGTCGTCGACAACGCCGCGAGTCACTTAAACCAGTGACTCATGGGATTCAACTCTTCAAAGAAGTTAAGGAGCTCAACTCACAGAATCCCTCTTTCATGGTCAAGATAAGAGACAGTAATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAGTTACAGTTTGGAAAGGAATCGTGGCCTGCTACGATAATCTACAATCCGACATCGAAAAATAGCTTTATTTCGGTTGGTTGGAGTTCTTTTGCCAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAACTCATCAATAAAAAAGATCTATTTGATGTTCATATTTGTAGAACCCAATACTAG 1143 0.3736 MASSSRQQNEHSPSTSTVICFFKIVLRQALQDEDFKLPIKFTKKYGSDLSNPLYLKPPDGTEWSIEWINHDGEILFKNGWKEFVAYYSLDHGHLLRFGYNIGTSHMEVHIFDMSCLQIEYPANDQIKEQLPRRGSWKMTHKSRMWKEALILTMKFNWEKPSFIIKITQRSQTRAPCYFSTKFFRKYFINNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASKLQAGDICLFKLINKKDPMLDVHICRRQRRESLKPVTHGIQLFKEVKELNSQNPSFMVKIRDSNPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPTSKNSFISVGWSSFARASKLEAGDVCVFELINKKDLFDVHICRTQY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02278 380 PANTHER B3 DOMAIN-CONTAINING 264 378 - -
Adu01g02278 380 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 264 378 - -
Adu01g02278 380 SMART B3_2 21 114 IPR003340 GO:0003677
Adu01g02278 380 SMART B3_2 285 379 IPR003340 GO:0003677
Adu01g02278 380 SMART B3_2 162 257 IPR003340 GO:0003677
Adu01g02278 380 CDD B3_DNA 283 377 IPR003340 GO:0003677
Adu01g02278 380 PANTHER B3 DOMAIN-CONTAINING 14 127 - -
Adu01g02278 380 PANTHER B3 DOMAIN-CONTAINING 137 255 - -
Adu01g02278 380 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 137 255 - -
Adu01g02278 380 Gene3D - 15 115 IPR015300 -
Adu01g02278 380 SUPERFAMILY DNA-binding pseudobarrel domain 15 114 IPR015300 -
Adu01g02278 380 ProSiteProfiles B3 DNA-binding domain profile. 284 379 IPR003340 GO:0003677
Adu01g02278 380 SUPERFAMILY DNA-binding pseudobarrel domain 156 256 IPR015300 -
Adu01g02278 380 ProSiteProfiles B3 DNA-binding domain profile. 203 257 IPR003340 GO:0003677
Adu01g02278 380 ProSiteProfiles B3 DNA-binding domain profile. 20 114 IPR003340 GO:0003677
Adu01g02278 380 CDD B3_DNA 160 255 IPR003340 GO:0003677
Adu01g02278 380 Pfam B3 DNA binding domain 296 378 IPR003340 GO:0003677
Adu01g02278 380 Pfam B3 DNA binding domain 174 257 IPR003340 GO:0003677
Adu01g02278 380 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Adu01g02278 380 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 127 - -
Adu01g02278 380 SUPERFAMILY DNA-binding pseudobarrel domain 278 377 IPR015300 -
Adu01g02278 380 CDD B3_DNA 20 112 IPR003340 GO:0003677
Adu01g02278 380 Gene3D - 140 258 IPR015300 -
Adu01g02278 380 Gene3D - 269 380 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02278 Adu-Chr1 90267927 90270890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02278 2 123 B3 DNA Binding Superfamily AT4G01580 36.066 4.61e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu01g02278 B3 2.3e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02278 - - adu:107471893 426.017