LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g02258	ATGGGGTGGTCTCAAGTGATAACCTTGACCACTCTTGTTGTTGGGGCCATGGCCATTACTGTTACATGTTCTTCTCCCTTTGTGCAGCAAAAGCTAGACAAGGTTGGAAAGCTACCAGGTCAATCTTTTGATATCAAGTTCCAACACTATTCTGGCTATGTCACTGTTAACGAGGAAGCTGGAAGGGTCCTCTTTTACTGGTTCATGGAGGCTGATCAGGACCCTCAAACCAAACCCCTTCTCTTATGGCTCAATGGAGGGCCTGGATGTTCATCCATTGCTTATGGTGAGGCAGAAGAAATTGGCCCCTTTCATATAAATCCAGATGGGAAAACACTTTATCTGAATCCTTACTCTTGGAACCAAGTTGCCAACGTTCTTTTTCTTGATTCTCCGGTTGGAGTTGAGTTTTCATATTCAAACACTTCATCTGACATTCTTAACAATGGCGACAAGAGGACGGCTGAGGACTCTCTAACATTCTTATTGAAGTGGTTTGAGCGTTTCCCCCAATATAAAGGAAGGGACTTCTTTATCGCCGGTGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGCTATCTTGAAGTACAACTCGGAAACAAAGAAAAATGCTATAAATCTGAAAGGATACTTGGTTGGAAATGCTCTTACTGATGATTTCCATGACCATTTGGGGGTTGCTCAGTTTATGTGGGCAAGTGGTTTGATTTCTGATCAAACATACAAACTATTGAACCAATGTGATTCCGAGTCGTTCGTACATCCCTCAAATTCTTGCGGTCAGGTTTTTGAAAATGCCGATGTAGAGCTCGGCAATATTGACCCTTACAGTATCTTTACTTCTCTGTGCCCTGGTAATGTTAGCCAGACAAAGCAATTGCTAAGAAGAAAGCATAGATTTGGTAGACTCAATGAAGGGTATGATCCTTGCACTGAGAAGCACTCTACTGCATACTTCAATCTACCTGAGGTCCAAAAGGCACTTCATGTTGATCAAGATCACAAGCCTAGTAAATGGGAAACCTGCAGTGAAGCTGTAAATATCAATTGGAAGGACTCTCCAAGTACGGTGCTCGATGTTTATCATGAACTTATTGGTTCAGGACTGAGGATATGGATGTTCAGTGGTGACACAGATTCAGTAATCCCGGTGACATCTACTCGGTATAGTATAGATGCTCTTAAGCTTCCGACAGTTAGCCCTTGGCGTCCATGGTATGACGAAGGGAAGGTGGGAGGGTGGACACAAGAATATGATGGACTCACCTTTGTGGCAGTAAGGGGAGCAGGACATGAAGTTCCTTTGCATAGACCAAAACTTGCTCTTTCACTCTTCAAAGCCTTCATAGCTGGAACCTCCATGCCCACTCTTCAGCTTGTCAGTGACTCCTAA	1401	0.4368	MGWSQVITLTTLVVGAMAITVTCSSPFVQQKLDKVGKLPGQSFDIKFQHYSGYVTVNEEAGRVLFYWFMEADQDPQTKPLLLWLNGGPGCSSIAYGEAEEIGPFHINPDGKTLYLNPYSWNQVANVLFLDSPVGVEFSYSNTSSDILNNGDKRTAEDSLTFLLKWFERFPQYKGRDFFIAGESYAGHYVPQLSQAILKYNSETKKNAINLKGYLVGNALTDDFHDHLGVAQFMWASGLISDQTYKLLNQCDSESFVHPSNSCGQVFENADVELGNIDPYSIFTSLCPGNVSQTKQLLRRKHRFGRLNEGYDPCTEKHSTAYFNLPEVQKALHVDQDHKPSKWETCSEAVNINWKDSPSTVLDVYHELIGSGLRIWMFSGDTDSVIPVTSTRYSIDALKLPTVSPWRPWYDEGKVGGWTQEYDGLTFVAVRGAGHEVPLHRPKLALSLFKAFIAGTSMPTLQLVSDS	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g02258	466	Gene3D	alpha/beta hydrolase	30	287	IPR029058	-
	Adu01g02258	466	Gene3D	-	360	454	-	-
	Adu01g02258	466	ProSitePatterns	Serine carboxypeptidases, serine active site.	179	186	IPR018202	GO:0004185
	Adu01g02258	466	PRINTS	Carboxypeptidase C serine protease (S10) family signature	116	128	IPR001563	GO:0004185\|GO:0006508
	Adu01g02258	466	PRINTS	Carboxypeptidase C serine protease (S10) family signature	129	139	IPR001563	GO:0004185\|GO:0006508
	Adu01g02258	466	PRINTS	Carboxypeptidase C serine protease (S10) family signature	165	190	IPR001563	GO:0004185\|GO:0006508
	Adu01g02258	466	PRINTS	Carboxypeptidase C serine protease (S10) family signature	424	437	IPR001563	GO:0004185\|GO:0006508
	Adu01g02258	466	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	7	460	IPR001563	GO:0004185\|GO:0006508
	Adu01g02258	466	Pfam	Serine carboxypeptidase	39	453	IPR001563	GO:0004185\|GO:0006508
	Adu01g02258	466	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 29	7	460	-	-
	Adu01g02258	466	SUPERFAMILY	alpha/beta-Hydrolases	34	457	IPR029058	-
	Adu01g02258	466	Gene3D	-	313	351	-	-
	Adu01g02258	466	ProSitePatterns	Serine carboxypeptidases, histidine active site.	424	441	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g02258	Adu-Chr1	90091602	90094415	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g02258	323	457	Calmodulin-binding Proteins	AT2G22960	26.471	9.25e-12	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g02258	K16297		-	fve:101295740	734.176