Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02219 ATGGCTAAAGGAGACAGCTTTCTGTCTCCATCACAAGAACCATCTTTTTTTCTTCCTCACCCAAACCCACCACCACCACCACCTTCCCTTCGAACTCCCTCTGTTATTCGATCTGACAGTTTCAGCTTCAACGATAAGGCCTTGAAGGTTAGTCCAAGCATACTCCTCATCATCATCATCCTCGCCATTGTTTTCTTCGTTTCTGGTTTGCTTCACCTACTTGTTAGGTTCCTATGGAGGCCTCAGAGTAGAGACCCTGATGATTTTGACAATGGCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGATCAGTCCTTCATAGACACGCTCCCTGTGTTCCACTACAAAGCCATCATAGGCTTGAAGAACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAACCGGAGGACAAGCTTAGATTGTTGCCCAAATGTAGCCATGCTTTTCACATGGAGTGCATTGACACATGGCTTTTGTCTCATTCTACTTGTCCTCTCTGTAGAGCTAGCTTGCTCCCTGATTTCTCTGCTAACAACACCAGCAACACGTGTTCCCCCATTGTTCTTGTCCTCGAATCTGGGAGTGAGAGTTCTAGGGAGATTATTGCTCCCGAAAGAGATACTGCTGCTGCAGCTGTTGCAAGAACAAGCTCTGTCATAACATCGAATTCCTGTGAATTTGGATCATCAACAAGGATTGATTTTCAAAACAAATCAGGTGAGTTGACTTCTTCAGGTGACAGCAACAAAGTTCTTAATATTGATGCAAATGGTGTAGAGAAAGTGGTGACTGTGAAGCTGGGCAAGTTTAGGAATGTTGATGGTGGTGGTGGTGGAGAAGGAAGCAGTAGCAGCAACAACAATGTGGATGGAAGGAGGTGCTTCTCAATGGGGTCATTTGCTTATGTTATGGATGAGAGTTCTTCACTACAGGTACCAATAAGAACCCCAATGAAGAAGAAACAGTCAAATAGTAAAAAGAAGAGTTCTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATATGACTCTGAGTCCAGAAGGGATTTCAGATTTGCATGCTTTGATGCCTCTAAAATTGAGGATTTTGGTGGTGCTGAAAGTAGTAACACTAATTGTAATGGGGCTGCAATTGGAAGGGGCAGAATAGAAAGCTTCTCTATATCAAAGATTTGGCTGAGAGGGAAGAAGGAGGAGAAGCAAAATGCAGCTGGAGATTCGTCCAGAAGAGCTGTTTCATTCCGGTTTCCGGCACCACAGAAGAACGCTGTTGGTTCTTCAGAAGAGATGAAGGCTAATAAGAATGTGAAATTTGATACAAGTAGTACTATTTCAGAGATGGATATTGCTAAATGGGAGAATGGAGGAAGTGAATATGGGTTTGATGAAGAAAGCCAAAGCTGCAATAGTATTGATTTTCAAGCTAGAGCTCCTTCATTTGCCAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAACAAGGTTGTTCACTCTTCTTCTGATTCCAGCATCTAG 1548 0.4386 MAKGDSFLSPSQEPSFFLPHPNPPPPPPSLRTPSVIRSDSFSFNDKALKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPQSRDPDDFDNGTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSANNTSNTCSPIVLVLESGSESSREIIAPERDTAAAAVARTSSVITSNSCEFGSSTRIDFQNKSGELTSSGDSNKVLNIDANGVEKVVTVKLGKFRNVDGGGGGEGSSSSNNNVDGRRCFSMGSFAYVMDESSSLQVPIRTPMKKKQSNSKKKSSLPLTPGHRPAMSEYDSESRRDFRFACFDASKIEDFGGAESSNTNCNGAAIGRGRIESFSISKIWLRGKKEEKQNAAGDSSRRAVSFRFPAPQKNAVGSSEEMKANKNVKFDTSSTISEMDIAKWENGGSEYGFDEESQSCNSIDFQARAPSFARRTLLWLTGRQNKVVHSSSDSSI 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02219 515 MobiDBLite consensus disorder prediction 16 31 - -
Adu01g02219 515 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Adu01g02219 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 422 - -
Adu01g02219 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 182 IPR013083 -
Adu01g02219 515 MobiDBLite consensus disorder prediction 1 31 - -
Adu01g02219 515 CDD RING-H2_PA-TM-RING 134 177 - -
Adu01g02219 515 SMART ring_2 135 176 IPR001841 -
Adu01g02219 515 Pfam Ring finger domain 134 177 IPR001841 -
Adu01g02219 515 SUPERFAMILY RING/U-box 114 186 - -
Adu01g02219 515 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 8 422 - -
Adu01g02219 515 MobiDBLite consensus disorder prediction 321 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02219 Adu-Chr1 89759242 89761205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02219 69 511 C3H Transcription Factor Family AT2G18650 44.323 1.57e-99 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02219 - - gmx:100797283 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02219 01 89759242 89761205 Adu01g02219 01 89759242 89761205 ECH