Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02218 ATGCCTCCTCAGCGTGATTCCCTACCCAAACCCAACCCTAATATCTTATCCTTCTTCCTCAAACCAATCATCATGCTTCTCCTTACCGCCCTCTTCTTCCTCTTCATTGGCTTCGCCGCTTTCATCCTCCTTCACCTCTTCCTCCCCCACTTCCGCGTCTCCAGAGGATCCCCATACCCCACCCCCGATTCCCGCTGCGTCGTCTGCCTCGACGGCTTCCGCAACGGCCAGTGGTGCAGGAACCTCGCCGGTTGCGGCCACGTCTTTCATCGGAGGTGCGTCGACACGTGGCTCGTCAAGGTCGCCGCTTGCCCCACATGCCGGACACCTGTTCGATTAAAT 342 0.5819 MPPQRDSLPKPNPNILSFFLKPIIMLLLTALFFLFIGFAAFILLHLFLPHFRVSRGSPYPTPDSRCVVCLDGFRNGQWCRNLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRLN 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02218 114 Pfam Ring finger domain 65 108 IPR001841 -
Adu01g02218 114 PANTHER RING-H2 FINGER PROTEIN ATL56 4 49 - -
Adu01g02218 114 SMART ring_2 66 107 IPR001841 -
Adu01g02218 114 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 49 - -
Adu01g02218 114 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Adu01g02218 114 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 48 114 - -
Adu01g02218 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 113 IPR013083 -
Adu01g02218 114 PANTHER RING-H2 FINGER PROTEIN ATL56 48 114 - -
Adu01g02218 114 SUPERFAMILY RING/U-box 61 112 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02218 10 113 C3H Transcription Factor Family AT2G18670 44.776 9.83e-31 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02218 - - pvu:PHAVU_003G150700g 132.494