LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g02204	ATGGTGCTTGCTTACCCTTCTAAGGTGCTAGTTGGACTCTCTTTGGACTCAGATGACAGCAAGGAGCTTCTCTCATGGGCAATAAGAGTCCTTGCCAATCCAAATGACAGCATTGTGGCAGTGCATGTTCTTGTTACTGAGGATAAGAAGAAGCGCGCCTCGGTCAGAAAGAGGCAATCACAACTTCGGCAGGCAAAGGCTCATGTTATATCTATGCTTGGAGAATTTGCACAAACATGTTGGTCTAAGCAGGTTAATCTGGAGGCAAGAGTGGCATTCAGTTCCACAGTAGGTGGAGGTTTAGCTGAGGAAGCCAAGTCCATCAATGCCGATTTTCTTCTTCTACGTGGCTCAAGAAATCCAAAAAACAAGAATGGAAGTTCCAAGGGAATTAGCAAGTATTGCTTTGAGCATGCACATGAAGGCTGCACTGTGGTCTCGGTTGGGAAATTCGCCAAGGCAGAGCAAGGCTCCAGTTCAAATCCGAAGCATTCTCAAGGTAATGATAGTGAAGCAAGTTCTAAATGGTTATCTAAGGATGATGATAATCAAGGTGACAAGGCTGCTACCTTCCCTGTTCTGAATGAATTCATGTCTGACTCTGAGTCTAAAGAACAGAACAGTTCACCAAGAACAGTACTAGATGCGCTGGAAGGGCAATCTAACAGCACAGAAGATGATACATTCAGCACTATGGTCTCAAGCACCTGCACCACAGATACACCTAAGAGAAGATCAAAGCCTCAATCTCCCTTGAGGCGCATAGCCTCCTTCCTCGGATCACCATTCCGAAGAAAACATAGCATGTCCAAGAATGAAAAGGCTCAACCCTTGTTGAAGTGCTTCAGCTATGAGCAGATAGCCAATGCTACTAATGAATTCCACCAAGATAATTTGGTCGGGAGAGGCGGATACTCGGAAGTATACAAAGGTGATCTTTGTGATGGAAGAAGCATTGCTGTGAAGAGATTGGCGAAGGACAACAATGATCTTAACAAGGAGAAAGAGTTCCTTATGGAATTGGGAGTTATTGGACATGTCTGCCATCCTAACACTGCATCCTTAGTTGGATGCTGCGTCGAAAATGGACTCTATCTAGTCTTCAATTACTCTCAGAATGGAAACTTGGCAACTGCACTGCACGGTAAAGGTGGAGATTCACTTGATTGGCCAATCAGATACAAGATTGCTATTGGAGTTGCAAGGGGGCTCCATTACCTTCATAAATGTTGCAAACACAGGATAATTCATCGCGATATCAAAGCTTCCAATGTTCTTCTAGGCCCTGATTATGAGCCAGAGATAACAGATTTTGGGCTTGCAAAGTGGCTTCCAAACAAGTGGAGTCATCATGCAGTGATCCCAGTAGAAGGGACATTCGGATACTTAGCACCAGAGTACTTCATGCATGGAATAGTGGATGAGAAAACAGATGTTTTTGCATTTGGTGTTCTTCTTCTTGAGATTGTAACTGGACGCAGACCTGTTGATTCATCAAGCCAAAACCTTCTCCTTTGGGCAAAGCCTCTGATGGAATCAGGGAATATTGGAGAGCTAGCTGATCCAAAAATGGATGGTAAATATGATGAAGAGCAACTCTATAGGTTGGTGCTTACAGCTTCATACTGTGTCAGACAAAATGCCACGTGGCGCCCTCCAATGAGCGAGGTGTTAGAGTTGCTGGCAAGTGGGAATGACTGTGAGGCAGGGAAAAGTTGGAGGATCCCAAAATTCACTTCAGATGAATTGGATGATTATTCCATGGTGTTTGGATATGATGTCCCCTCACACATATCTCTCGAGGATTTTCTCTGA	1815	0.4435	MVLAYPSKVLVGLSLDSDDSKELLSWAIRVLANPNDSIVAVHVLVTEDKKKRASVRKRQSQLRQAKAHVISMLGEFAQTCWSKQVNLEARVAFSSTVGGGLAEEAKSINADFLLLRGSRNPKNKNGSSKGISKYCFEHAHEGCTVVSVGKFAKAEQGSSSNPKHSQGNDSEASSKWLSKDDDNQGDKAATFPVLNEFMSDSESKEQNSSPRTVLDALEGQSNSTEDDTFSTMVSSTCTTDTPKRRSKPQSPLRRIASFLGSPFRRKHSMSKNEKAQPLLKCFSYEQIANATNEFHQDNLVGRGGYSEVYKGDLCDGRSIAVKRLAKDNNDLNKEKEFLMELGVIGHVCHPNTASLVGCCVENGLYLVFNYSQNGNLATALHGKGGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPEITDFGLAKWLPNKWSHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIVTGRRPVDSSSQNLLLWAKPLMESGNIGELADPKMDGKYDEEQLYRLVLTASYCVRQNATWRPPMSEVLELLASGNDCEAGKSWRIPKFTSDELDDYSMVFGYDVPSHISLEDFL	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g02204	604	Gene3D	HUPs	4	148	IPR014729	-
	Adu01g02204	604	Pfam	Protein tyrosine and serine/threonine kinase	296	560	IPR001245	GO:0004672\|GO:0006468
	Adu01g02204	604	ProSitePatterns	Protein kinases ATP-binding region signature.	300	322	IPR017441	GO:0005524
	Adu01g02204	604	PANTHER	OS08G0249100 PROTEIN	6	594	-	-
	Adu01g02204	604	MobiDBLite	consensus disorder prediction	154	173	-	-
	Adu01g02204	604	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	7	140	-	-
	Adu01g02204	604	Gene3D	Transferase(Phosphotransferase) domain 1	372	573	-	-
	Adu01g02204	604	Pfam	Universal stress protein family	8	146	IPR006016	-
	Adu01g02204	604	CDD	USP_Like	8	148	-	-
	Adu01g02204	604	MobiDBLite	consensus disorder prediction	218	245	-	-
	Adu01g02204	604	SUPERFAMILY	Protein kinase-like (PK-like)	268	561	IPR011009	-
	Adu01g02204	604	PANTHER	OS08G0249100 PROTEIN	6	594	-	-
	Adu01g02204	604	MobiDBLite	consensus disorder prediction	154	187	-	-
	Adu01g02204	604	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	415	427	IPR008271	GO:0004672\|GO:0006468
	Adu01g02204	604	Coils	Coil	321	341	-	-
	Adu01g02204	604	ProSiteProfiles	Protein kinase domain profile.	294	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Adu01g02204	604	MobiDBLite	consensus disorder prediction	218	254	-	-
	Adu01g02204	604	Gene3D	Phosphorylase Kinase; domain 1	257	370	-	-
	Adu01g02204	604	SMART	serkin_6	294	561	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g02204	Adu-Chr1	89482890	89485720	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g02204	227	557	Trihelix Transcription Factor Family	AT1G68690	41.765	1.04e-73	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Adu01g02204		PK_Tyr_Ser-Thr	1.8e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g02204	-		-	ccaj:109809416	983.786