Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02203 ATGGGCCTTAAGGGGTTGAGGAGCGGCTGGACCGTGCCGCCCAAGCCATGTGACTCCTGCAAGATCGCTTCCGCGGCACTCTTCTGCCGCCCTGATTCCGCCTTCCTCTGCATAGCCTGCGATTCCAAGATTCACTGCGCCAACAAGCTTGCTTCGCGCCACGACCGAGTCTGGATGTGTGAGGTCTGCGAGCAGGCACCTGCTGCGGTCACCTGCAAAGCTGACGCAGCAGCCCTCTGCGTCACCTGCGACTCTGACATCCACTCTGCTAACCCCCTCGCCCGCCGCCACGAGCGCATTCCCGTCGAGCCTTTCTTTGACTCTGCCGACTCCATCGTCAAGGCCTCTGCCGCCTCCTTTAGCTTCGTCGTCCCAACCGACAACGGCATCTCCTCTGACGGATTCCCCAACGACGACGCCGCCTGGCTCATTCCCAACCCAAACTACGGCTCAAAGCTTATGGACGCCCCGGACATGAAATCAAGGGAGATGTTCTTCTCAGAAATGGACCCCTTCCTCGATTTCGATTATTCCAACTCCTTCCAGAACAACAACAACAACAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCGGTTCAATCCAAACCCGCTCCCATGATGAATCACCATGCCGAAGGTAGCTGCTTCGACATCGATTTTTGTAGATCGAAGCTTTCCTCCTTCAACTATCCATCACAGTCTATTAGCCAAAGCGTTTCTTCGTCTTCGCTTGATGTAGGAGTGGTGCCAGACGGGAACACCGTCTCGGATATATCGTACTCGTTCGGCCGGAACTGCTCCGATTCGAGTGGGATGGGATCGGCGGGAAGTGGCGGCGGAGGTACGCAGCTGTGCGGGATGGACCGTGAGGCGAGGGTGCTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACCATAAGATACGCTTCGCGTAAGGCTTATGCAGAAACCCGGCCCAGGATCAAGGGCCGGTTCGCTAAACGGACCGAAATCGAGTCGGAGGTGGATCGTCTCTACAGCCCCGGCGGTGGTGTCCCAGGGTGTCTCATGCTGGACAACCAATACGGCGTCGTACCATCGTTTTAG 1098 0.5701 MGLKGLRSGWTVPPKPCDSCKIASAALFCRPDSAFLCIACDSKIHCANKLASRHDRVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERIPVEPFFDSADSIVKASAASFSFVVPTDNGISSDGFPNDDAAWLIPNPNYGSKLMDAPDMKSREMFFSEMDPFLDFDYSNSFQNNNNNNNNSAGNDSVVPVQSKPAPMMNHHAEGSCFDIDFCRSKLSSFNYPSQSISQSVSSSSLDVGVVPDGNTVSDISYSFGRNCSDSSGMGSAGSGGGGTQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESEVDRLYSPGGGVPGCLMLDNQYGVVPSF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02203 365 CDD Bbox1_BBX-like 16 59 - -
Adu01g02203 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 365 IPR045281 GO:0009909
Adu01g02203 365 Pfam CCT motif 290 332 IPR010402 GO:0005515
Adu01g02203 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 4 365 - -
Adu01g02203 365 ProSiteProfiles CCT domain profile. 290 332 IPR010402 GO:0005515
Adu01g02203 365 SMART bboxneu5 60 102 IPR000315 GO:0008270
Adu01g02203 365 SMART bboxneu5 12 59 IPR000315 GO:0008270
Adu01g02203 365 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
Adu01g02203 365 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Adu01g02203 365 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Adu01g02203 365 CDD Bbox1_BBX-like 60 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02203 Adu-Chr1 89467602 89469661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02203 3 365 C2C2-CO-like Transcription Factor Family AT5G57660 54.111 1.80e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Adu01g02203 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02203 - - gmx:100805693 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02203 01 89467602 89469661 Adu01g02203 01 89467602 89469661 ECH