Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02119 ATGTTTATTAGCTGGCGTTCCAGCATTGCCATTTCATCACCGCCAATCCCAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTTATCATTCTCCACCTCCATCTTCAACTTCTCCTCCGAAAACCCTAGGATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGTTCCCCCTTCTACCCTCCCTTTTGGACGCAAACCCCTTGTCTGTGTCGTCAGCGTCCCCAATCACATGACCTACGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTTCACTACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCGACAATCAAGGCTCCACCGACAGCTTCTTCAAGCATTACAATAGCCGTCGTTTCTCCTCTCTGGTGGTTGAGCCCACATGTCCAGTTTGCCTTGAATTGTTAGATCAAGACACCAGTGGAATTCTCACTACTCTATGTAATCATTCTTTTCATTGTTCCTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTGTCGTTATTGCCAACAGCAAGCTGAAAAATCCATATGTTCTGTTTGTCGGACGACTGAAAACCTTTGGATATGTGTGATATGCGGGTTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAGCATTACTATGCCCTAGATGTGGAAACCAAGCAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCGTTACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGATGTTGTTGCAAGAGGCCAAGATTGACAGGCGTAACAAAGAGAAGAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGCTTGGAAAGCAAAGTTGCTTGAGATTGAGGAGAGGTATTCTTTTATCTTTTATATCTTTCTTATGGCTGATCGATTTCGATTATGTAATTATGTTGCTACTGATTCTAATTACTTGAGCTTTGAGTGGTTGGAAATTTGGTCCAAAGGTCTGAAAACTGAATGGTGTGACTTGTTTCAAGGGAAAAAAATTCTTAAAACGGTCAAAGGAGAGAGTAGCAAGCCTGGAAGAGCAGATGATGCGAAGCCGGAACAACAACAGTTGCCTGAGCATAACGAAATCAAAGATGGACTTGTGTCTGCCTCATTCAAAGGAATGCTCGTCAACTACTAA 1290 0.4333 MFISWRSSIAISSPPIPIPIPIPIPNEEPLSFSTSIFNFSSENPRIEETRGLMHLFPDQVPPSTLPFGRKPLVCVVSVPNHMTYADFCQFCGSFLHYILEMRIVRMDGTEDQYSVLIRFDNQGSTDSFFKHYNSRRFSSLVVEPTCPVCLELLDQDTSGILTTLCNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIMHWKETQHYYALDVETKQNGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLATQLENQKSYFEMLLQEAKIDRRNKEKKFLEELNENLVKNEDAWKAKLLEIEERYSFIFYIFLMADRFRLCNYVATDSNYLSFEWLEIWSKGLKTEWCDLFQGKKILKTVKGESSKPGRADDAKPEQQQLPEHNEIKDGLVSASFKGMLVNY 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02119 429 ProSiteProfiles Zinc finger UBP-type profile. 180 275 IPR001607 GO:0008270
Adu01g02119 429 SUPERFAMILY RING/U-box 162 252 - -
Adu01g02119 429 Pfam Zn-finger in ubiquitin-hydrolases and other protein 197 251 IPR001607 GO:0008270
Adu01g02119 429 Pfam BRCA1-associated protein 2 67 148 IPR011422 -
Adu01g02119 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 271 IPR013083 -
Adu01g02119 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 185 IPR013083 -
Adu01g02119 429 SMART ring_2 146 185 IPR001841 -
Adu01g02119 429 MobiDBLite consensus disorder prediction 389 408 - -
Adu01g02119 429 Pfam Ring finger domain 145 186 IPR001841 -
Adu01g02119 429 Coils Coil 292 331 - -
Adu01g02119 429 ProSiteProfiles Zinc finger RING-type profile. 146 186 IPR001841 -
Adu01g02119 429 CDD RING-H2_BRAP2 144 187 - -
Adu01g02119 429 PANTHER BRCA1-ASSOCIATED PROTEIN 142 244 - -
Adu01g02119 429 PANTHER BRCA1-ASSOCIATED PROTEIN 246 300 - -
Adu01g02119 429 PANTHER BRCA1-ASSOCIATED PROTEIN 26 141 - -
Adu01g02119 429 SMART Zf_UBP_1 196 245 IPR001607 GO:0008270
Adu01g02119 429 CDD RRM_BRAP2_like 73 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02119 Adu-Chr1 88432324 88435044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02119 133 186 C3H Transcription Factor Family AT1G72220 44.643 7.18e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02119 K10632 - gmx:100794688 491.115