Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02118 ATGCTTTTGAAATATGGCCTTGGAGAAGAAAGGGCTGCTGAAAGAATAGAGAAAGCAGTGGGGATTTCGAACTGCGGACATATATTCTGCTGGAACAAAGCTGGTTGGATGCAAACAAGTTCAAACCCAGACTCATCAAATCACACAACCCCAGCCAAAAAACCCTTGCACTGTAAGCCTACACCACCGCCGCCGCAAGGAGCCGCGTCCGTCGCACTCAAAGTTCGCCATCCGTCCGTCGATCTAGCTTCCCTCGTGATACAAGTATTCAACCCCTGTTCGCTGTCACCGATCGCGACTGCTTCCTCGAGCTCGGCGTCCGTCGTCTTTGTCTGCTCAGCTGCGCTTCCGTCGCCGTTTGTTTGCCGTTCACGTTCACGTCTTCGTTCAGCTGTCGTCTTCGTTTGCGTTCTTCGGCATTCACGTTCGCTCGGTGTTCACTCGCCGTTCACCGTTCGAGTTCGCATTCGTGTTCGTCTGGAAGCCACGTTGCTCTGCTTCAAACACTGCGACCAACCCGCGCGCTTCACCTGGCCGTCGAACTGTTCTCTTTTGTCGCCGCCGAAAGCGGGGAGTGAAGGAGGAGGGGAGGAGCAGGAGGGAAAGGTGATTAAGATTAAGAGACGTGTCACTGCCATTTCATCACCGCCAATCCCAATCCCAATTCCAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTCATCATTCTCCACCTCCGTCTTCAACTTCTCCTCCGGAAACCCTAGGATCGAGGAGACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGATCCCCCTTCTACCCTCCCTTTTGGACGCAAACCCCTCGTCTGCGTCGTTGGCGTCCCCAATCAGATGACCTATGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTTCACCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCGACGATCAAGACTCCACCGACAGCTTCTTCAAGCATTACAATGGCCGCTGTTTCTCGTCGCTGGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATTGAACATGCTCAACCATCCAATGCTACATCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGGTTAGATCAAGACACCAGTGGAATTCTCACTACTATATGCAATCATTCTTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCTATATGTTCTGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGGTTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAGCATTGCTATGCCCTAGATGTGGAAACCAAGCAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCGTTACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAGTTGCTTTCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGTCGTTGTTGCAAGAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGAAGAGCTTAATGAGAATCTTGTTAAAAATGAGGATGCTTGGAAAGCAAAGTTGCTTGAGATTGAGGAGAGGGAAAAAAAATTCTTAAAACGGTCGGAGGAGAGAGTAGCAAGCCTAGAAGAGCAGCTTAGATATCTCATGACTTGTCTAGATGATGTGAAGCCGGAACAACAGTTGCCTGATTATAACGAAATAAAAGATGGGCTTGTGTCTGCCTCATCAAAGGAATCCTTGTCAACTACTAACTCTCAGCTTGGCAAAAATCCATAA 1905 0.4803 MLLKYGLGEERAAERIEKAVGISNCGHIFCWNKAGWMQTSSNPDSSNHTTPAKKPLHCKPTPPPPQGAASVALKVRHPSVDLASLVIQVFNPCSLSPIATASSSSASVVFVCSAALPSPFVCRSRSRLRSAVVFVCVLRHSRSLGVHSPFTVRVRIRVRLEATLLCFKHCDQPARFTWPSNCSLLSPPKAGSEGGGEEQEGKVIKIKRRVTAISSPPIPIPIPIPIPIPIPNEEPSSFSTSVFNFSSGNPRIEETRGLMHLFPDQDPPSTLPFGRKPLVCVVGVPNQMTYADFCQFCGSFLHHILEMRIVRMDGTEDQYSVLIRFDDQDSTDSFFKHYNGRCFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIMHWKETQHCYALDVETKQNGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLSTQLENQKSYFESLLQEKIQAKIDRCNKEKKFLEELNENLVKNEDAWKAKLLEIEEREKKFLKRSEERVASLEEQLRYLMTCLDDVKPEQQLPDYNEIKDGLVSASSKESLSTTNSQLGKNP 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02118 634 ProSiteProfiles Zinc finger UBP-type profile. 415 510 IPR001607 GO:0008270
Adu01g02118 634 SMART ring_2 381 420 IPR001841 -
Adu01g02118 634 Pfam Zn-finger in ubiquitin-hydrolases and other protein 432 486 IPR001607 GO:0008270
Adu01g02118 634 PANTHER BRCA1-ASSOCIATED PROTEIN 481 529 - -
Adu01g02118 634 PANTHER BRCA1-ASSOCIATED PROTEIN 529 627 - -
Adu01g02118 634 PANTHER BRCA1-ASSOCIATED PROTEIN 232 479 - -
Adu01g02118 634 Coils Coil 528 587 - -
Adu01g02118 634 MobiDBLite consensus disorder prediction 40 69 - -
Adu01g02118 634 Pfam BRCA1-associated protein 2 273 368 IPR011422 -
Adu01g02118 634 Pfam Ring finger domain 380 421 IPR001841 -
Adu01g02118 634 SMART Zf_UBP_1 431 480 IPR001607 GO:0008270
Adu01g02118 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 358 423 IPR013083 -
Adu01g02118 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 503 IPR013083 -
Adu01g02118 634 ProSiteProfiles Zinc finger RING-type profile. 381 421 IPR001841 -
Adu01g02118 634 CDD RING-H2_BRAP2 379 422 - -
Adu01g02118 634 MobiDBLite consensus disorder prediction 615 634 - -
Adu01g02118 634 CDD RRM_BRAP2_like 279 360 - -
Adu01g02118 634 SUPERFAMILY RING/U-box 397 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02118 Adu-Chr1 88417173 88424840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02118 377 421 C3H Transcription Factor Family AT1G72220 48.936 5.32e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02118 K10632 - gmx:100794688 634.024