Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02115 ATGGAGGAGTTGAAGTTGGGAGAGTATTTGGATGAGAACGCCGTATTGAGTGGCACAGTGAATTTTGATGAGCACTTGCTTCCCCAACACAGTACAAGCACTGCCGTTTCATCACTGCCAATCCTAATTCCAATTCCAATTCCAATCCCCAACGAGGAGCCTTCATCATTCTTCACCTCTGTCTTCAACTTCTCCTCTGAAAACCCTAGGATCGAGGAAACCCGCGGCCTCATGCATCTCTTCCCCGACCAAGATCCCCTTTCTACCTTCCCTTTTGGACGCAAACCCTTCGTCTGCGTCATCGGTGTCCCCAATCACATGACCTACGCGACTTCTGCCAGTTCTGTGGTACCTTCCTTCACCACATCCTTGAGATGCGCATTGTCAGGTACTACCCTACCTCCTTCCCCCGTCTGTTCTTCCCTTCACTACTCTCTTACTTTCTTTCCTTCTTGCTTCAGAATGGATGGAACGGAAGATCAGTACAGCGTTTTGATCCGCTTCAATGATCAAGGCTCCACCGACAGCTTGTTCAAGCATTACAATGGCCGCCGTTTCTCCTCTCTGGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCGTTGAACATGCCCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGTCGTTAGATCAAGACACCAGTGGAATTCTCACTACTATATGTAATCATTCCTTTCATTGTTCGTGCATATCAAAATGGGCTGATTCTTCTTGTCCTGTGTACCGCTATTGCCAACAGCAAGCAGAAAAATCCATATGTTCTGTTTGTCGGAACACTGAGAACCTTTGGATATGTATTATATGTGGGTTTGTTGGTTGTGGAAGATATAAAGCAGGACATGCCATCATGCACTGGAAAGAGACACAACATTGCTATGCCCTAGATGTGGAAACCAAACGTGTGTGGGATTTTGTGGGAGACAACTACGTTCATAGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACTCACTGTGTTCATGCAGAGAATGGGTGTGGAAGTTGCAGCTGTGAAGATAATTCTATGAGCGAGGCGTTACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAGTTGCTTGCTACTCAACTTGAAAACCAAAAATCTTATTTTGAGTTGTTGTTGCAAGAGGTAAAAGAAGAAACTGAGAGAAAAATCTCTAAAGCTGTTCAAAAGGCTGTCAGTCTTAAACAGCAGAAGATTCAGGCCAAGATTAACAGATGTAACAAAGAGAAGAAATTTCTGAAGGAGCTAAGATATCTCATGACTTGTCTAGATGATGCGAAGCCGGAACAACAACAGTTGCCTGAGCATAACGAAATCAAAGATGGGCTTTTGTCTGCCTCATCAAAGGAATCCTCGTCAACTACTAACTCTCAACTTGGCAAAAATCCATAA 1482 0.4447 MEELKLGEYLDENAVLSGTVNFDEHLLPQHSTSTAVSSLPILIPIPIPIPNEEPSSFFTSVFNFSSENPRIEETRGLMHLFPDQDPLSTFPFGRKPFVCVIGVPNHMTYATSASSVVPSFTTSLRCALSGTTLPPSPVCSSLHYSLTFFPSCFRMDGTEDQYSVLIRFNDQGSTDSLFKHYNGRRFSSLEVEVCRVLFTLDVQYTGSVEHAQPSNATSTEQPTCPVCLESLDQDTSGILTTICNHSFHCSCISKWADSSCPVYRYCQQQAEKSICSVCRNTENLWICIICGFVGCGRYKAGHAIMHWKETQHCYALDVETKRVWDFVGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSMSEALLNSKVEAIVNEYNELLATQLENQKSYFELLLQEVKEETERKISKAVQKAVSLKQQKIQAKINRCNKEKKFLKELRYLMTCLDDAKPEQQQLPEHNEIKDGLLSASSKESSSTTNSQLGKNP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02115 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 267 IPR013083 -
Adu01g02115 493 MobiDBLite consensus disorder prediction 459 493 - -
Adu01g02115 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 349 IPR013083 -
Adu01g02115 493 SMART Zf_UBP_1 274 323 IPR001607 GO:0008270
Adu01g02115 493 MobiDBLite consensus disorder prediction 474 493 - -
Adu01g02115 493 Pfam BRCA1-associated protein 2 153 211 IPR011422 -
Adu01g02115 493 CDD RING-H2_BRAP2 222 265 - -
Adu01g02115 493 Coils Coil 389 446 - -
Adu01g02115 493 ProSiteProfiles Zinc finger RING-type profile. 224 264 IPR001841 -
Adu01g02115 493 SMART ring_2 224 278 IPR001841 -
Adu01g02115 493 ProSiteProfiles Zinc finger UBP-type profile. 258 351 IPR001607 GO:0008270
Adu01g02115 493 PANTHER BRCA1-ASSOCIATED PROTEIN 53 457 - -
Adu01g02115 493 SUPERFAMILY RING/U-box 240 339 - -
Adu01g02115 493 Pfam Zn-finger in ubiquitin-hydrolases and other protein 275 334 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02115 Adu-Chr1 88373193 88376401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02115 220 264 C3H Transcription Factor Family AT1G72220 46.809 6.96e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02115 K10632 - gmx:100794688 629.017