Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02083 ATGCCTACTACTACCACTACTCTTCTTGATCTCAATCAAGATCTAACTCTAAGCCATGATGATGACCAAGAACACCAGCAACAACAACAACAACAACCCTCTTCTCTTTCATTTCCAATCCTACTCAACCCCCTACCTCATCAAAAGGTTGAGAAGATTGATGATGCTAATTGTAGTAGTGGATCACGGGATCATTCAGAAAAACCTAATCACGGCAGTGGAATCATCAAGCTGATTTGGAAGAATAAGAAACGAGATGAGGCAGAAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGATCCCAAAGTGGATGCCTTCCAAGATGAGGATGATGCGCAAGATGATGGCATCCGATCATCATCATCAACAACAACAGGAACAAGAGATTCCTATTATTGGAACGGACGATGACAACAACAATCACAACAGTAATACCACTGCTCCTACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACTCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAATGCGTGCGGTATACGACAAAGAAAGGCGAGGCGTGCCGCCATGGCTGCTGCGGCGGCAAATGGAACCACACTGGCGGCGGCTGAGGTAAACAAGTTTGGTAGAAGCAAAGAGAAGCAGCTCAAGTCCAAAACTGGCAGTAGCGAGTTGATGAAAAAGAAGCGCAATAAGCTTGGAGCTGCTGGGAGAGGGAAGCAATCTCATCATCGTCATCATCATCATCATCATGATTATTGTTTCGAGGATTTGAGATTAAGCTTATTAAGCAAGAATTTGGCTGTTCATCAAGTATTCCCTCAGGACGAGAAAGAAGCTGCGATCCTTCTCATGGCCTTATCCTATGGTCTTCTTCTTGGATGA 888 0.4471 MPTTTTTLLDLNQDLTLSHDDDQEHQQQQQQQPSSLSFPILLNPLPHQKVEKIDDANCSSGSRDHSEKPNHGSGIIKLIWKNKKRDEAEAEEEEEEEEEVIPKWMPSKMRMMRKMMASDHHHQQQQEQEIPIIGTDDDNNNHNSNTTAPTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAANGTTLAAAEVNKFGRSKEKQLKSKTGSSELMKKKRNKLGAAGRGKQSHHRHHHHHHDYCFEDLRLSLLSKNLAVHQVFPQDEKEAAILLMALSYGLLLG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02083 295 Coils Coil 78 101 - -
Adu01g02083 295 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 10 293 - -
Adu01g02083 295 CDD ZnF_GATA 153 185 IPR000679 GO:0006355|GO:0043565
Adu01g02083 295 MobiDBLite consensus disorder prediction 213 251 - -
Adu01g02083 295 MobiDBLite consensus disorder prediction 1 75 - -
Adu01g02083 295 Gene3D - 145 234 IPR013088 GO:0006355|GO:0008270
Adu01g02083 295 MobiDBLite consensus disorder prediction 233 251 - -
Adu01g02083 295 Pfam GATA zinc finger 154 187 IPR000679 GO:0006355|GO:0043565
Adu01g02083 295 ProSiteProfiles GATA-type zinc finger domain profile. 152 184 IPR000679 GO:0006355|GO:0043565
Adu01g02083 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 148 188 - -
Adu01g02083 295 MobiDBLite consensus disorder prediction 27 41 - -
Adu01g02083 295 SMART GATA_3 148 200 IPR000679 GO:0006355|GO:0043565
Adu01g02083 295 ProSitePatterns GATA-type zinc finger domain. 154 179 IPR000679 GO:0006355|GO:0043565
Adu01g02083 295 MobiDBLite consensus disorder prediction 48 71 - -
Adu01g02083 295 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 10 293 - -
Adu01g02083 295 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02083 Adu-Chr1 88054419 88055463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02083 103 295 C2C2-Gata Transcription Factor Family AT4G26150 42.788 2.63e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Adu01g02083 GATA 3.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02083 - - aip:107642994 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02083 01 88054419 88055463 Adu01g02083 01 88054419 88055463 ECH
Adu01g02083 01 88054419 88055463 Adu03g02044 03 38986809 38989349 PCT