Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02082 ATGATCCGTCACTGCAAATTGCTCTCTTCCATTACAAATCTTTGGAAACTCACCCACAATCTCTCTGGCTCTCGCTCCTTCATTTGCCCGGTACCTTTTGAGCAAAAGTTAATATCTTGTACCTCTATAACCGCATTCACTTCAGTTTGGAGAATTGCAGGTTTCTACAAAGATTTGAACTTTATTGAGCAGTTTAGTTCAATCAGATGCTATTGCCATAATGCTGGTGGGCATAAGGAATGGACTGAGGAAATTGAGTACTTGGATGAATCGGGTAGTATTCTTTACAAGGGTAAGGGTATAAGGTCTGTGGAGCCTGGGATTGATGATCATGTGGTGGTGGGTGAGGTCAAGAAGCCCTTTGTAAATGCTGCAGCTGTGGCAAAAATAGTTGAGGTTGTGAAGAGGTGGAAATGGGGGCCAGAGTTGGAGACACAATTGGACAAGCTTCAGTTTATGCCTAACATGACTCACATTGTTCAATCCTTGAAGATCATTAGTGATAGTGATGCATGTTTGAGTTTGTTTAGGGACTTTGATGGAATACAATCATTGTTTGATGAGATGGTTGGTGATTCTACCAGTACTGGAGCTTTCTTGTCTATTTCATGTAATCGGGTGATTCAATATTTGGCCAATGTTGAGAAGTTGGAGGTCTCATTTTGCTGCTTTAAGAAGATACAGGAGGCCGGTGGTGAGACTGACACCGAAACATACAATTCCCTTATTACTTTGTTTTTCGGTAAAGGTTTGCCTTATAAAGCATTTGAGATATACGAAAGCATGGAAAAGGGTTCTGAGAATGGTGACACTGTGAACTATGCAACTGTGGATTATTTGATGGCGTCGAAAAAGCGTTTGGAAAAGAAGCACCTTGCTGGTGCAGTTGCTGGAGATGACGAGGGATCGCAACTGTTATTGCTCAATGCTGCTGAGGAGTTCTGTTACAAGAAAGGTAGCAATGAGTTGAATGAGGTTGCACTTATTCTAAAAGCCCTCTATGATGTTGATTTGGTGGAGGAAGAGCACGTCGTGCATTGGTATTCAAAGGGACTGAAGGGTGATAAGAAGGACTCTCAGGTATGGAAGAATGCTCAACCATTCATTGATTGGCTTCGGAATGCTGAATCAAAATCGGAGGAAGAATGA 1149 0.4204 MIRHCKLLSSITNLWKLTHNLSGSRSFICPVPFEQKLISCTSITAFTSVWRIAGFYKDLNFIEQFSSIRCYCHNAGGHKEWTEEIEYLDESGSILYKGKGIRSVEPGIDDHVVVGEVKKPFVNAAAVAKIVEVVKRWKWGPELETQLDKLQFMPNMTHIVQSLKIISDSDACLSLFRDFDGIQSLFDEMVGDSTSTGAFLSISCNRVIQYLANVEKLEVSFCCFKKIQEAGGETDTETYNSLITLFFGKGLPYKAFEIYESMEKGSENGDTVNYATVDYLMASKKRLEKKHLAGAVAGDDEGSQLLLLNAAEEFCYKKGSNELNEVALILKALYDVDLVEEEHVVHWYSKGLKGDKKDSQVWKNAQPFIDWLRNAESKSEEE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02082 382 Pfam eIF4-gamma/eIF5/eIF2-epsilon 304 382 IPR003307 GO:0005515
Adu01g02082 382 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 65 177 - -
Adu01g02082 382 SMART 542_3 290 378 IPR003307 GO:0005515
Adu01g02082 382 Gene3D - 270 382 - -
Adu01g02082 382 SUPERFAMILY ARM repeat 299 376 IPR016024 -
Adu01g02082 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 265 IPR002885 -
Adu01g02082 382 Pfam PPR repeat 238 264 IPR002885 -
Adu01g02082 382 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 196 246 - -
Adu01g02082 382 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, MITOCHONDRIAL 65 177 - -
Adu01g02082 382 CDD W2_eIF5 284 380 - -
Adu01g02082 382 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 196 246 - -
Adu01g02082 382 ProSiteProfiles W2 domain profile. 232 382 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02082 Adu-Chr1 88038215 88040266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02082 288 375 Eukaryotic Initiation Factors Gene Family AT1G77840 53.933 1.78e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02082 - - mtr:MTR_4g094688 348.977