Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02059 ATGGATGGCGTATTCAACCTCCCTGAAGCCACCAGGAGCGACTTTCTCCGCTCTCTCATGCACACTTTTGGTTGCACATACATATGCCTCTGGCACTGCCACTCATCATCTAATAATTTATTGTTCTTGGATGGGATTTACAATAATGTAAGTAGCACCGTAGCTGAAGAAACGCTTTTTAATCTATATCAGCGTTTAACCTTTGATGCCGCCAATGACGAGTGGGTTCCTGGTGCGGCTTTCAGGAGGCACATGGCCTACTTAGAGCTTCAACAATTGGATCTTCTAAGACTTGCATCCGCCGTTATCCAAACACAATTCTATCTGGAAGCAAGGATTGAGACAGCTATCTTCATGGGGTGCAGCAAAGGGGAAATTGAGCTTGGTTTCTCCACTATCCCTCAAATTGACATGAAAGCAGCAGTGAAGAGTTTATTCCCAGAAGATTTTTCAAGAGAGCAGATTCATCATCCAGCTTCATCGTCTTCATGTTCTTGCCCTAGCGATGAATTCTCATCCTTAGGGGGAGTATTGTTACCCGCACCAGAGGGTGAGCAAGAAGCAATCATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCACCCGCCACCACTACTTCTCAACCACCACCATATAATAACAGTGCTTTCAGGGCATACCCTTCAACTACTTACAATTTAGTAACAAGTAGCAGCAGAAGGTTTAGTTTAATGAAGAGATCTATAGAATTCTCTAGAACCCTACATTTAATGAGAATTAGAGACCGCTTTCATTTTCAACGTCAACATCAACCGCCTCATCCCCTCATAATTGGTACCCAGAATGCTAATAATAATAAGCATCTTCATCACATCATATTAGAGAGAAGAAGACGCGAGAACGAAAACAAGTGTTTCCGGGAACTTAGGGCATTACTTCCTCCAGGAACTAAGAAACACAAATCTTCGGTTCTTATAGCGGCAAAGGAGGCATTGAAGTCTTTAATTGCTGAAATTGAAAAGCTTAACATAAGAAACCAGCAGTTAAAAACACTACTTGGTTCATCATCATCAAGCTATGGAAATGTTCATATCTCCTCATCACCATCATCATCAAATGAGAGATTGAACGTTGCGGTGTCGCATAACCTCAGCTTCGTTTCCATGGCCGCAAATACTACTACTAATACACAAGGCACAACCATCACCCAAATCATCTTCAGAATAAGGATTCTTCAGGGAAGTGAATGGGACGAGTCTGGCTTCGTGGAAGCAGTGAGAAGAGTTGTGTCTAACTTACCTTAA 1287 0.4211 MDGVFNLPEATRSDFLRSLMHTFGCTYICLWHCHSSSNNLLFLDGIYNNVSSTVAEETLFNLYQRLTFDAANDEWVPGAAFRRHMAYLELQQLDLLRLASAVIQTQFYLEARIETAIFMGCSKGEIELGFSTIPQIDMKAAVKSLFPEDFSREQIHHPASSSSCSCPSDEFSSLGGVLLPAPEGEQEAIIRAILHVISSSSSPATTTSQPPPYNNSAFRAYPSTTYNLVTSSSRRFSLMKRSIEFSRTLHLMRIRDRFHFQRQHQPPHPLIIGTQNANNNKHLHHIILERRRRENENKCFRELRALLPPGTKKHKSSVLIAAKEALKSLIAEIEKLNIRNQQLKTLLGSSSSSYGNVHISSSPSSSNERLNVAVSHNLSFVSMAANTTTNTQGTTITQIIFRIRILQGSEWDESGFVEAVRRVVSNLP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02059 428 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 376 - -
Adu01g02059 428 SMART finulus 286 335 IPR011598 GO:0046983
Adu01g02059 428 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 376 427 IPR044658 -
Adu01g02059 428 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 376 IPR044658 -
Adu01g02059 428 Pfam Helix-loop-helix DNA-binding domain 283 329 IPR011598 GO:0046983
Adu01g02059 428 Gene3D - 277 352 IPR036638 GO:0046983
Adu01g02059 428 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 376 427 - -
Adu01g02059 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Adu01g02059 428 Coils Coil 319 346 - -
Adu01g02059 428 CDD bHLH_AtbHLH_like 285 336 IPR045239 -
Adu01g02059 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 345 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02059 Adu-Chr1 87733830 87737174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02059 1 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 32.957 2.59e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu01g02059 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02059 - - ahf:112776694 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02059 01 87733830 87737174 Adu01g02059 01 87733830 87737174 ECH
Adu01g02059 01 87733830 87737174 Adu03g02075 03 40955664 40960610 PCT