Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02028 ATGGTTTGGTTTCAATGTGAGGACTGCGGCGACAACCTCAAGAAGCCCAAGTTGGCTGGTCACTTCCGAAGCTGCTCCGCTTATAGGTTATCATGCATTGACTGTGGTGAAACTTTTGGCCAAGACACCGTTCAGAACCACACTCAGTGTATGACCGAAGCGGAAAAGTATGGTCCAAAGGGGCAAGTCAAGAATGGTGCACCTGCAAAGCCTAACAAGGATGGCAACAAGCAAAAGCCTGAGGTTGATATCAATGTTGGTTTGTCCGAACGCCCTCCATGGTTTTGTAGTCTTTGCAATACACAAGCTACAAGCAAGCAAACACTTCTTCTCCATGCCGATGGGAAGAAACATCGGGCAAAAGCCCGAGCATACCATGCTTCAAAACAACCACTGCCCCAGACAGACAAATCTGCACCTGATGCTAAGATTTTGTCGGAGGCTGCTCCTAATGAGGCTAGAGAAGGCAAAAATGCAGAGCAGCCAAAATTAGAAGAGTCTTCTAAACAAGATAATTTGAAATCAGGGGACGAAATGTCTTCAGCAAAAAAGAGGAAACTTGAAGCGTCGGAGGGTGATCTTATTAAAAAATGCAGGAATGACATTTCTGTTGACACTGGAAATGGAGAAGTTATTCAGGGTGAAGAAGCAGAAGGGAGAGTAGAATCTGCTGTCAAAAATAAAATTAAGTGGAAGAAGCTTATCAAATCAGCTCTGAAATCTGTATGTTCTTTTAACGTTGAAATGACATACTTTATTGTTTTGTGCTTAATTTACCTGTCTTATACTGATCCTATTTGTATATTTTGGGCATAA 816 0.4252 MVWFQCEDCGDNLKKPKLAGHFRSCSAYRLSCIDCGETFGQDTVQNHTQCMTEAEKYGPKGQVKNGAPAKPNKDGNKQKPEVDINVGLSERPPWFCSLCNTQATSKQTLLLHADGKKHRAKARAYHASKQPLPQTDKSAPDAKILSEAAPNEAREGKNAEQPKLEESSKQDNLKSGDEMSSAKKRKLEASEGDLIKKCRNDISVDTGNGEVIQGEEAEGRVESAVKNKIKWKKLIKSALKSVCSFNVEMTYFIVLCLIYLSYTDPICIFWA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02028 271 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 241 IPR039999 GO:0003677
Adu01g02028 271 MobiDBLite consensus disorder prediction 58 80 - -
Adu01g02028 271 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Adu01g02028 271 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Adu01g02028 271 MobiDBLite consensus disorder prediction 120 188 - -
Adu01g02028 271 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Adu01g02028 271 SUPERFAMILY beta-beta-alpha zinc fingers 81 127 IPR036236 -
Adu01g02028 271 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Adu01g02028 271 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Adu01g02028 271 Gene3D Classic Zinc Finger 88 130 - -
Adu01g02028 271 Pfam Zinc-finger of C2H2 type 94 118 - -
Adu01g02028 271 Gene3D - 1 50 - -
Adu01g02028 271 SMART ZnF_U1_5 91 125 IPR003604 GO:0003676|GO:0008270
Adu01g02028 271 MobiDBLite consensus disorder prediction 148 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02028 Adu-Chr1 87237348 87239651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02028 73 219 C2H2 Transcription Factor Family AT2G19380 40.940 3.72e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02028 K15263 - gmx:100790703 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02028 01 87237348 87239651 Adu01g02028 01 87237348 87239651 ECH