Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02020 ATGCTTACATGCATAGCACGTCCCAAGAAATCAGGCACGGGCAGCAACAACGAGTCTCTGAGTAAGACCGATGATTCCGATCCCAACAACAAAAACCAGTCCATGAAATCTCTCACTTCCCAGATAAAGGACATGGCGCTGAAGGCGTCGGGGGCGTACAAGCATTGCGCGCCGTGCACGGCGGGGCCAGCGGGGAGACTGGTGAGGAGAAACGGGGAGTCGTCGCCGGAGACGGACTCGGACAGGTTCAGGTGGTCGTACCGGAGGACAGGGAGCTCGACGAGAGGTTGGGGGAAGGAGATGGAGGCGAGGCTGAAGGGGATATCGTCGTCGAGTGGGGAAGGCACGCCGAACTCCGCCAGCGGACGGCGGTTGGAGCCGGTGGTTCTGTTCGTCGAAGAGAATGAACCAAAGGAGTGGGTGGCGAACGTGGAGCCCGGCGTTTTGATCACCTTCGTGTCGCTTCCACGTGGCGGCAACGATCTCAAGCGCATTCGTTTCAGTCGCGAGATGTTTAACAAATTGCAAGCTCAAAGGTGGTGGGCGGAGAACTATGACAGGGTGATGGAACTTTACAATGTTCAAAGGCTTAACCGTCAAGCATTCCCTCTTCCAACACCGCCAAGGTCCGAAGATGAGATCTCAAAGCTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGGTATGGGAGTGGGATACTCTTCCTCGGATTCCTTCGATCATCAATCGATGCAATCCCGGAAGCTGCATGAATTAAATGGTGTTAACTCAACTCCAAAAGTCTCAACCATTAGTGCTGCCAAGACTGAGATATCGTCAATGGATGCTTCAATCAGAAGTAGCTCATCCAGAGAGGCTGATCAATCCGGCGATCTATCAATCAGCAATGCAACCGATTTGGATACCGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACCATCAGAGCATTGCCAGGTGGCAAAAAGGAGCTCAGACGAGTTAGGTTCAGCCGAGAAAAATTTGGGGAGATGCATGCTAGATTATGGTGGGAGGAGAATCGTGCTAGAATACATGAACAATACTTGTGA 1119 0.4879 MLTCIARPKKSGTGSNNESLSKTDDSDPNNKNQSMKSLTSQIKDMALKASGAYKHCAPCTAGPAGRLVRRNGESSPETDSDRFRWSYRRTGSSTRGWGKEMEARLKGISSSSGEGTPNSASGRRLEPVVLFVEENEPKEWVANVEPGVLITFVSLPRGGNDLKRIRFSREMFNKLQAQRWWAENYDRVMELYNVQRLNRQAFPLPTPPRSEDEISKLEXXXXXXXXXXXXXXXXXXXXXXXTGMGVGYSSSDSFDHQSMQSRKLHELNGVNSTPKVSTISAAKTEISSMDASIRSSSSREADQSGDLSISNATDLDTEWVEQDEPGVYITIRALPGGKKELRRVRFSREKFGEMHARLWWEENRARIHEQYL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02020 372 Pfam Transcription factor BRX N-terminal domain 28 59 IPR027988 -
Adu01g02020 372 Pfam Transcription factor regulating root and shoot growth via Pin3 317 371 IPR013591 -
Adu01g02020 372 Pfam Transcription factor regulating root and shoot growth via Pin3 138 192 IPR013591 -
Adu01g02020 372 Coils Coil 214 218 - -
Adu01g02020 372 MobiDBLite consensus disorder prediction 290 310 - -
Adu01g02020 372 MobiDBLite consensus disorder prediction 9 44 - -
Adu01g02020 372 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 372 IPR044532 -
Adu01g02020 372 ProSiteProfiles BRX domain profile. 317 372 IPR013591 -
Adu01g02020 372 MobiDBLite consensus disorder prediction 1 44 - -
Adu01g02020 372 ProSiteProfiles BRX domain profile. 138 193 IPR013591 -
Adu01g02020 372 MobiDBLite consensus disorder prediction 61 83 - -
Adu01g02020 372 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02020 Adu-Chr1 87180109 87183729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02020 1 372 Major Intrinsic Protein MIP AT1G31880 42.821 4.20e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02020 - - aip:107620530 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02020 01 87180109 87183729 Adu01g02020 01 87180109 87183729 ECH
Adu01g02020 01 87180109 87183729 Adu03g02211 03 44341376 44348380 PCT