Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02017 ATGGGTGATGTTCTAAGCCCCTACACACTTTCACCCCCACCTTCTTCATCATCTTCTTCAACAAAGTCCAACATTATCATGCTATATTATGGCCTGGCAGTTGTTGGAACCGCCGCAATAGCGCTAGCACTTTACAACTACTGCGTCATCAGAAGATGCAGCAGGCAACAACAACCGCAGCCCGAAACAACAAGTGGGTTGGTCGAGGTTGTCGTGTCAAGAAGTATGAGCTTCGAGAATTCGCAAAGTAACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGAAGCAGAGAAAAAGGAGAAAGCCCAAAAAGAAGAAGAAGAAGAAGGTGATGAGGATGGTTCTTATGATGAGTGCCCCGTTTGTTTATCGGTTTTCGAAGAAGGTGAAGAAGTGAGGAAGCTTCCGAGATGCAAGCACTCTTTTCATGCTCAGTGTATAGATATGTGGCTTCACTCCCATTTTGATTGCCCTGTTTGCCGTACACCGGTGGGGGCTTTCTTCCGCCGTTTTCCGCCGGAGACTAATAATAATAATAATTCCGTTGAGGAGTTGCCGGAATCCGGTGGTGTATGA 576 0.4601 MGDVLSPYTLSPPPSSSSSSTKSNIIMLYYGLAVVGTAAIALALYNYCVIRRCSRQQQPQPETTSGLVEVVVSRSMSFENSQSNLLSSFKYKKEEAEKKEKAQKEEEEEGDEDGSYDECPVCLSVFEEGEEVRKLPRCKHSFHAQCIDMWLHSHFDCPVCRTPVGAFFRRFPPETNNNNNSVEELPESGGV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02017 191 Pfam Ring finger domain 117 161 IPR001841 -
Adu01g02017 191 SMART ring_2 119 160 IPR001841 -
Adu01g02017 191 Coils Coil 86 113 - -
Adu01g02017 191 MobiDBLite consensus disorder prediction 1 21 - -
Adu01g02017 191 MobiDBLite consensus disorder prediction 96 115 - -
Adu01g02017 191 CDD RING-H2_EL5_like 118 161 - -
Adu01g02017 191 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 181 - -
Adu01g02017 191 MobiDBLite consensus disorder prediction 172 191 - -
Adu01g02017 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 165 IPR013083 -
Adu01g02017 191 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Adu01g02017 191 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 181 IPR044675 -
Adu01g02017 191 SUPERFAMILY RING/U-box 118 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02017 Adu-Chr1 87161564 87162323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02017 32 164 C3H Transcription Factor Family AT5G17600 35.556 6.36e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02017 - - aprc:113852327 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02017 01 87161564 87162323 Adu01g02017 01 87161564 87162323 ECH
Adu01g02017 01 87161564 87162323 Adu03g02218 03 44677164 44677921 PCT