Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02009 ATGGGGAGAAGCCCTTGTTGCTCAAAAGATGAGGACTTGAAAAGAGGTGCTTGGACTGCTGATGAAGACAAAATCCTCATAGACTACATTAGGGTCCATGGCCATGGAAGATGGAGAAACCTCCCCCAAAAAGCAGGTTTAAAAAGATGTGGCAAAAGTTGTAGACTGCGATGGTTGAACTATCTAAGACCAGACATCAAAAGAGGCAATATATCCTCTGATGAAGAAGAACTCATCATCAGACTTCACAACCTCCTGGGAAATAGGTGGTCTCTAATAGCTGGGAGGCTTCCGGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACCAACTTGAGTAAGAGGATGAAAGATAACAAGGATCACAACAAAGAAACAACCACCTCTTCTTCGAATCCAAAACACCCTCAAACAGAACCAACCCCACCTTTTAAGATTGACTTCCCTGTAATCCGAACAAAGGCTACAAAGTGCTCAAAGCCATTACTCATAAATAACAATGCACGACAATCAACACCGGTACCTTTGCTTCTGGATGCTTCTGCTGCTGCTGCTGCTGATTCTGAAGCCAACAACAATAAGAATATCGTTTCATCAATAGCAAGTAACCACAAAGAAGTACTCTCAAAGAACTACAATAGTAATGATGAGTTTTTGCCCTTCTTCAATGAAGATGATGACAAAGAAATACTCTCAAATACAGATTTGCTAATAGACGATTATTGTAATCTTACCGATGCTGATGGCGGCTTAAATGATCTTATCAATTCTGATGTCTCTGATCTCTGCTACGAGCTATTATTATCGCCTTATTCGGACCAACCCACCACCATCTTCTCCGATGACATCCTCAATCAATGGACACATGGCTATTTCGATGATGCTGATGATCACATTAATCATGATGATGACTCAATCATTGACCGTCATTGTCACCAGTCAAATGCCAAGGAGATAGAATAA 966 0.411 MGRSPCCSKDEDLKRGAWTADEDKILIDYIRVHGHGRWRNLPQKAGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLSKRMKDNKDHNKETTTSSSNPKHPQTEPTPPFKIDFPVIRTKATKCSKPLLINNNARQSTPVPLLLDASAAAAADSEANNNKNIVSSIASNHKEVLSKNYNSNDEFLPFFNEDDDKEILSNTDLLIDDYCNLTDADGGLNDLINSDVSDLCYELLLSPYSDQPTTIFSDDILNQWTHGYFDDADDHINHDDDSIIDRHCHQSNAKEIE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02009 321 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Adu01g02009 321 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Adu01g02009 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Adu01g02009 321 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Adu01g02009 321 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Adu01g02009 321 CDD SANT 72 113 IPR001005 -
Adu01g02009 321 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 266 - -
Adu01g02009 321 PANTHER TRANSCRIPTION FACTOR TT2 1 266 - -
Adu01g02009 321 Gene3D - 12 68 - -
Adu01g02009 321 MobiDBLite consensus disorder prediction 115 129 - -
Adu01g02009 321 Gene3D - 71 141 - -
Adu01g02009 321 MobiDBLite consensus disorder prediction 114 147 - -
Adu01g02009 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Adu01g02009 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Adu01g02009 321 CDD SANT 17 62 IPR001005 -
Adu01g02009 321 SMART sant 14 64 IPR001005 -
Adu01g02009 321 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02009 Adu-Chr1 87112252 87113546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02009 1 117 MYB Transcription Factor Family AT4G05100 70.085 2.30e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu01g02009 Myb_DNA-binding 1.1e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g02227 03 45462403 45464816 Adu01g02009 01 87112252 87113546 PCT