Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g02006 ATGATGAATGGTGGAAGCAGCAGGAGCAGCAGGTTCCCATTCACACCATCACAGTGGCAAGAGCTTGAACACCAAGCACTCATCTACAAATACATGGCTTCCGGCATCTCCATCCCCCCTGATCTCCTCTTCTCCATCAAAAGAGGCTACCACCTTGACCACTCTAGGCTCTTCCCTCACCACCACCCTCCACAACACCTTGGATGGAACTATCTGCAGATGGGTCTGGGAAGAAAGATAGACCCTGAACCAGGAAGATGCAGAAGAACCGATGGAAAAAAATGGAGATGCTCAAAGGAAGCATATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGCAAGAACCGTTCAAGAAAGCCTGTGGAACAACAACAACCTTTGAAACAATCACCAGCAGCAGCACCAACGAACACCGATGATGCTGCTGCTTCTTCTCATCATGCTCCATCTTCTTCAACCACAACAACAATCTTATCAATCACCAACAACAATAACTCTCTCTCTCCTCTCTCATCTGCATCACTGTCCTCTCATCATGACCTTTATCATCAACACCAACACCAACACTCCTTCCTCTACCACCACCAACCCTCTTCAAGGTCCTCCAACTCCATTGGCTTCTCTTTTCAGGACAACAACGCTGCTCCTTTGTTTCTTGACACCCAGACCAACACCGACTGCAGAGAGAGGTATATTTATGGGCTGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAACCTTCGGGAACAATGAGAAGCTTCTCTGCTTCGTCCATGGATGATTCATGGCAGCTGACACCACTCACCATAAGCTCCTCAACTTCTTCGAAGCAGAGGAGCTGCTCTGGCTTGTCCAATGAAAACAACAACGAGTACTCTTACTTGCAGCTTCACCACCATAGCTTCAACGCTGATCATAACAACAACAACTCAAAGCAAAGAGAAGCAGAACAAGATCATCATCAGCAGGGTGGTGGTTGCTACATGGCTCTTGGGAAAGAAGAAGAGCCACATCATCAGAAGACCACCGTTCATCGTTTCTTCGATGAATGGCCTCACAAGAGTAGAGGAGGCTCATCCTGGCTTGATTTGGATGATAAATCTTCCACTACTCAGCTTTCCATTTCCATCCCCACATCCTCTCATGACTTCACAACCTTCACTTCAAGGAACACTAGAGATGGTTAA 1197 0.472 MMNGGSSRSSRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKRGYHLDHSRLFPHHHPPQHLGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQQQPLKQSPAAAPTNTDDAAASSHHAPSSSTTTTILSITNNNNSLSPLSSASLSSHHDLYHQHQHQHSFLYHHQPSSRSSNSIGFSFQDNNAAPLFLDTQTNTDCRERYIYGLKEEVDEHAFFTEPSGTMRSFSASSMDDSWQLTPLTISSSTSSKQRSCSGLSNENNNEYSYLQLHHHSFNADHNNNNSKQREAEQDHHQQGGGCYMALGKEEEPHHQKTTVHRFFDEWPHKSRGGSSWLDLDDKSSTTQLSISIPTSSHDFTTFTSRNTRDG 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g02006 398 MobiDBLite consensus disorder prediction 108 162 - -
Adu01g02006 398 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Adu01g02006 398 PANTHER - 3 374 IPR031137 GO:0005634|GO:0006351|GO:0032502
Adu01g02006 398 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Adu01g02006 398 MobiDBLite consensus disorder prediction 305 331 - -
Adu01g02006 398 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Adu01g02006 398 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Adu01g02006 398 PANTHER GROWTH-REGULATING FACTOR 5 3 374 - -
Adu01g02006 398 Pfam WRC 82 124 IPR014977 -
Adu01g02006 398 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g02006 Adu-Chr1 87086155 87087673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g02006 2 127 GRF Transcription Factor Family AT3G13960 66.923 6.08e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Adu01g02006 WRC 8.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g02006 - - ahf:112758812 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g02006 01 87086155 87087673 Adu01g02006 01 87086155 87087673 ECH
Adu01g02006 01 87086155 87087673 Adu03g02238 03 46129297 46131652 PCT