Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01980 ATGCAGCAACACAGGTTGAGACAGCATGCTATGATGCAGCACTCTCTCTACCACCACCCTGCTCTCCTAACTCCTCCACAGATTGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCAAGTTCATGCCGCAGTGTCTATGTTGGCAACATTCATCCTCAGGTTTCAGAATCCCTTCTTCAAGAGCTTTTTTCAAGTGCAGGCGCACTTGAAGGATGCAAGCTCATTAGGAAAGATAAGTCGTCCTATGGCTTTGTTGATTACTTTGATCGCAGTGCAGCTGCATTTGCAATTGTAACTCTCAACGGAAGGCACATCTTTGGCCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACTTCAGGTCATTTTAATATTTTTGTTGGTGACCTTAGCCCTGAGGTTACAGATGCAACCTTGTTTGCTTGCTTCTCTGTGTATCCCACTTGTTCAGATGCGAAGGTAATGTGGGATCAGAAAACAGGGCGGTCCAGGGGATTTGGCTTTTATTTTTCTGACACTTTAGGTAAGTGGCTTGGAAGTAGACAGATACGTTGTAACTGGGCCACTAAAGGGGCTAACAGCAATGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCGGAAGAAGCGCAGCAAGTAACCAGTGATGATGCACCAGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTCGCTCCAGAGGCAAGGGTTACATCTGTTGATCTTCATCACCATTTTCATGCCCTTGGTGTTGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGATTTGTGAGATACAGTACACATGATGAAGCAGCTCTTGCTATCCAGATGGGTAATGCTCGGATTCTGTTTGGCAAACCTGTCAAGTGTTCATGGGGTAGCAAGCCCACTCCTCCTGGAACAGCCTCTACTCCTCTTCCCCTACCTAGTACTGCACATGTGCCTGGCTTTTCTCCTGTGGGACTTGCAGCGTATGAACGTCAAATGGCTCTGAGCAAGATGGGTGGTGCGCATGCGGCGCTTATGCATCAGCAGAATCAGCATGCTGCCATGAAGCAGGCAGCCATGGGAATGGGTGCTCCTAACCAGCACCTTATGTACTATCAGTAA 1176 0.4651 MQQHRLRQHAMMQHSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVSESLLQELFSSAGALEGCKLIRKDKSSYGFVDYFDRSAAAFAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPTCSDAKVMWDQKTGRSRGFGFYFSDTLGKWLGSRQIRCNWATKGANSNDEKQSSDSKSVVELTNGTSEEAQQVTSDDAPEKNPQYTTVYVGNLAPEARVTSVDLHHHFHALGVGIIEDVRVQRDKGFGFVRYSTHDEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPLPSTAHVPGFSPVGLAAYERQMALSKMGGAHAALMHQQNQHAAMKQAAMGMGAPNQHLMYYQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01980 391 SMART rrm1_1 242 313 IPR000504 GO:0003723
Adu01g01980 391 SMART rrm1_1 132 194 IPR000504 GO:0003723
Adu01g01980 391 SMART rrm1_1 47 116 IPR000504 GO:0003723
Adu01g01980 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Adu01g01980 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 243 310 IPR000504 GO:0003723
Adu01g01980 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 176 IPR000504 GO:0003723
Adu01g01980 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 241 317 IPR000504 GO:0003723
Adu01g01980 391 SUPERFAMILY RNA-binding domain, RBD 45 200 IPR035979 GO:0003676
Adu01g01980 391 CDD RRM1_TIA1_like 48 118 - -
Adu01g01980 391 Gene3D - 218 321 IPR012677 -
Adu01g01980 391 Gene3D - 40 125 IPR012677 -
Adu01g01980 391 CDD RRM3_TIA1_like 241 317 - -
Adu01g01980 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Adu01g01980 391 SUPERFAMILY RNA-binding domain, RBD 230 321 IPR035979 GO:0003676
Adu01g01980 391 MobiDBLite consensus disorder prediction 199 239 - -
Adu01g01980 391 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 382 - -
Adu01g01980 391 Gene3D - 126 213 IPR012677 -
Adu01g01980 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 176 IPR000504 GO:0003723
Adu01g01980 391 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01980 Adu-Chr1 86818203 86822002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01980 42 311 Eukaryotic Initiation Factors Gene Family AT3G16380 26.481 6.84e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01980 K13201 - gmx:100813736 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01980 01 86818203 86822002 Adu01g01980 01 86818203 86822002 ECH