Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01960 ATGGCATTTCAAGATTTCGATGTCATCTCGGAACGTCGAAGAAATGAGCAGAAGGCAAAACTCAAGAAGAGGATCATCATGGGCGTTGTAGCCGCCATCGTCCTTGTAGGCATCATCGGCGCAGTCTTCGTCGTGGTATTGCCAGGAAATGACAGCAAAAGCAACAGCACTCCATCGTCGCATTCTCCATCATCATCTTCGTACTCCTCGTCGTCGTCGTCACCACCATCAATCGCAAAATCGGAGAAGATGGTGGAACTTGTCTGCGATGGTGCCGAGTACAAAGACAAATGTGAAGGACCTCTGTCAGATGCATTGAAGAACGACCCTTCCATGTCGCAACCCAAGGATATTCTCAAGTACTACGCCAAATATGCAGAGGATGCAGTTAACGCTGCCTTCGCCAAAACCGAAACCCTCAACTTCGAATCCCCGGAGGAGCAAGGCGCCTATGAAGATTGCAAGCAGATCTTCTCTGATGCCAAGATCGACCTGGAGGCCATCACGAACCAAGTATCCGGAGACAACATCGATTTGAGGAACATCACCAACAGTACTCCTGATTTGAACAGCTGGCTCAGTGCTGTCATCAGTTACCAACAAACTTGCATCGACGGTTTCCCTGAGGGACAGTTGAAGACTGATCTTGAGAACCTCTTCAAGGACTCTAAGGAGTTTGTTAGCAACACACTTAACATTGTTTCCAAGGTTGGTAACTTCCTCTCCTCCTTGCCATCGTTCCGGAGTTTGGCCGAGGAGAAGCATCAGTCGCCGCTCAATTTCCTGGACAAACGCGATGGCTTTCCTAACTGGCTTAGCCAGAAGGACAGGAGGATGTTGAAGGCTGCCGATAACAGGCCCACACCTAATGTCACCGTCGCCAAGGATGGCTCCGGGGACTTCAAAACCATCTCTGAAGCTTTGGCTGCCATGCCTAAGACATACGAAGGAAGGTATGTGATTTTTGTTAAGGAAGGAGTGTACGATGAGACAGTGACAATAACACAGAAAATGCAGAACGTAACCTTGTTTGGTGAAGGTTCCCAGAAGAGCATCATCACCGGCAACAAAAACTTTAGGGACGGTACCAGGACCTTCCTAACTGCCCCATTTGCTGTGCTAGGAGATGGATTTATTGGAAAGTCGATGGGATTCAGGAACACAGCTGGGCCAGAAGGACACCAAGCTGTGGCTGCGAGAGTGCAAGCTGACCGCGTGGTGTTTGTGAACTGCCGCTTCGAGGGTTACCAAGACACACTATACGCCCAAACCCACAGGCAATTCTACAGGAGTTGCATCATTTCCGGCACCATCGATTTCATCTTTGGTGACGCCGCAGCAGTTTTCCAGAACTGTATCATGGTTGTTAGGAAGCCAATGGACAACCAACAAACCATCATAACCGCACAAGGCAGAGTTGATCCAAAACAGACCACCGGCATAGTCCTCCAGAAATGCATCATCAAGGCTGATGACTCACTTGTGCCTGTCAAGGCCCAGTTCAAGAACTACCTTGGTAGGCCATGGAAGGAATACTCCAGGACAGTAATCATGGAATCCGACATCGGAGATCTCATTCACCCGGAGGGATGGCTTCCTTGGGCCGGCGATTTCGCTCTTAAGACACTCTACTATGCTGAGTATGCAAACACTGGACCTGGTTCCAAGACCGATGGTAGGGTTAACTGGCCCACCTATCATGTCATCAACAAGCAAGAAGCTGCCCAGTTCACTGTCGCACAATTCTTGAAGGGATCTTGGGTCCAGGGCACCGGTGTGCCATCAGTTCAGGGTTTCTATAACTAA 1806 0.495 MAFQDFDVISERRRNEQKAKLKKRIIMGVVAAIVLVGIIGAVFVVVLPGNDSKSNSTPSSHSPSSSSYSSSSSSPPSIAKSEKMVELVCDGAEYKDKCEGPLSDALKNDPSMSQPKDILKYYAKYAEDAVNAAFAKTETLNFESPEEQGAYEDCKQIFSDAKIDLEAITNQVSGDNIDLRNITNSTPDLNSWLSAVISYQQTCIDGFPEGQLKTDLENLFKDSKEFVSNTLNIVSKVGNFLSSLPSFRSLAEEKHQSPLNFLDKRDGFPNWLSQKDRRMLKAADNRPTPNVTVAKDGSGDFKTISEALAAMPKTYEGRYVIFVKEGVYDETVTITQKMQNVTLFGEGSQKSIITGNKNFRDGTRTFLTAPFAVLGDGFIGKSMGFRNTAGPEGHQAVAARVQADRVVFVNCRFEGYQDTLYAQTHRQFYRSCIISGTIDFIFGDAAAVFQNCIMVVRKPMDNQQTIITAQGRVDPKQTTGIVLQKCIIKADDSLVPVKAQFKNYLGRPWKEYSRTVIMESDIGDLIHPEGWLPWAGDFALKTLYYAEYANTGPGSKTDGRVNWPTYHVINKQEAAQFTVAQFLKGSWVQGTGVPSVQGFYN 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01960 601 Gene3D - 285 599 IPR012334 -
Adu01g01960 601 Pfam Pectinesterase 290 585 IPR000070 GO:0030599|GO:0042545
Adu01g01960 601 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 237 IPR035513 -
Adu01g01960 601 Pfam Plant invertase/pectin methylesterase inhibitor 85 233 IPR006501 GO:0004857
Adu01g01960 601 TIGRFAM PME_inhib: pectinesterase inhibitor domain 67 235 IPR006501 GO:0004857
Adu01g01960 601 PANTHER PECTINESTERASE 14 599 - -
Adu01g01960 601 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 237 IPR035513 -
Adu01g01960 601 SMART PMEI_2 80 233 IPR006501 GO:0004857
Adu01g01960 601 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Adu01g01960 601 MobiDBLite consensus disorder prediction 53 78 - -
Adu01g01960 601 CDD PMEI-like_3 87 236 - -
Adu01g01960 601 SUPERFAMILY Pectin lyase-like 287 597 IPR011050 -
Adu01g01960 601 PANTHER PECTINESTERASE 14 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01960 Adu-Chr1 86395698 86398082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01960 1 601 Carbohydrate Esterase AT4G33230 47.317 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01960 - - gmx:100784679 794.653