Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01953 ATGGGTTTCTATGCTGAGGACTCATCATCTGCATATGGTTGGACAATAGGTCAAGCCATATATGAAGCAGCTCTAATCATTGCAGTTCTGAGATGGGTCTTGTGCTTGGTTTTCAGGCTCATCAAAGATAGAGGAACAACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTACTCTTGTGTTGACCACGTTTCGTGAGATAATGGAGAGGCTTCCAGAGACAGAAGAAGATACATCTTGTGCAGTGTGCTTGAACCAGATGAAGATGGAAGATGAGGTTAGGGAACTAATGAACTGCTACCATGTCTTCCACAGAGAATGCATCGACAAATGGTTGGACAATGATGACAACAACCAGAACCCTACTTGCCCTCTTTGTAGAGCACCTTTGCTCACTCTTAATCATTGCAGTTATTCTTCATCAGAGAGCTCTTTTGGTTGTGTGCCACCATCTACTCAACCTAGTTGGGCTGTGGAGAGACTTCTCTACCTCTTCGGAGATGATCTTCTTCCTTGCTAG 561 0.4296 MGFYAEDSSSAYGWTIGQAIYEAALIIAVLRWVLCLVFRLIKDRGTTPSSSSSSSSSSSSSSSSSSSSSSCTLVLTTFREIMERLPETEEDTSCAVCLNQMKMEDEVRELMNCYHVFHRECIDKWLDNDDNNQNPTCPLCRAPLLTLNHCSYSSSESSFGCVPPSTQPSWAVERLLYLFGDDLLPC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01953 186 MobiDBLite consensus disorder prediction 45 69 - -
Adu01g01953 186 Pfam Ring finger domain 93 141 IPR001841 -
Adu01g01953 186 SUPERFAMILY RING/U-box 88 147 - -
Adu01g01953 186 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 185 - -
Adu01g01953 186 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 185 - -
Adu01g01953 186 ProSiteProfiles Zinc finger RING-type profile. 94 141 IPR001841 -
Adu01g01953 186 SMART ring_2 94 140 IPR001841 -
Adu01g01953 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 145 IPR013083 -
Adu01g01953 186 SMART ringv_2 93 141 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01953 Adu-Chr1 86286890 86287450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01953 1 183 C3H Transcription Factor Family AT5G20885 46.632 1.01e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01953 K16281 - gmx:100306203 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01953 01 86286890 86287450 Adu01g01953 01 86286890 86287450 ECH