Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01893 ATGCGTGGTATCAGCTATTTGAATAATAAGTACTCATCACCATCTCCATTCCAATCTCATTCGTATGATGCTAATAACATGCCGCCATCATCATCTGTAATTAGCAGAATAAGTCCACTCATTCTGTTAGTTATAATAGTCTTAGCAGTTATCTTCTTCGCTTATGGCCTTGTCCATTTGATTCTATGGTTCTTCATCAAAATCCTATCATCATCCTCGTCGTCGTCGTCTAACAGGTTCCAAGAATCATCGAGGCGCTCCCGCGCGATTCAGAGACAGCTTCACCATCTCTTCCGAATGCACGATTCGGGACTAGAACAATCCACCATTGATGCTCTCCCAGTGTTCTACTACCAAGAATTGTTGGGGCTAAAAGAACCATTTGATTGTGCAGTGTGCCTCTGCGAATTCTCTGCGAACGAGAAGCTGAGGTTGGTTCCAATTTGCAGCCATGCATTTCACATGAACTGCCTCGACACATGGCTTCTCTCAAACTCTACATGTCCTCTCTGTAGAGCAAATCTCTCTAGCTCTATCGTGAATCAGAATCAGAATCCAGTTCGTGTTGTTGAGGAAGAGAATAAGAATGGTGGTGAAGGGAGTGAAGAGGGAGACGAAGGTGGTGGTGGGAGGAAAAGGGTGTTTTGTGTGAGACTTGGGAAACTGAGGAACGGTGAATTGATTGAGAGAGAAGAGAGTAGTAGTAGTAGTATTGGGTTGGATGGGAGAAGATGCTACTCAATGGGTTCATATGAGTATGTGGTTAGAGAATCGAATCTGAAAGTGGAAGTGGTGTTATCATCTCAGTCTCTTCATGTTGGTGGTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAAAGAAGATAGGGAAGAAGAGAACAAGAGGTGAGAGCTTCTCAGTTTCAAAGATTTGGCTATGGTCCAACAAGATCAAATATAATCATCATAGATCCAATAATGCAGATGCAGATTTTCCTTTGTCACCAATAACAAAGAAAGCACTATTAATCTAA 1056 0.4186 MRGISYLNNKYSSPSPFQSHSYDANNMPPSSSVISRISPLILLVIIVLAVIFFAYGLVHLILWFFIKILSSSSSSSSNRFQESSRRSRAIQRQLHHLFRMHDSGLEQSTIDALPVFYYQELLGLKEPFDCAVCLCEFSANEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRANLSSSIVNQNQNPVRVVEEENKNGGEGSEEGDEGGGGRKRVFCVRLGKLRNGELIEREESSSSSIGLDGRRCYSMGSYEYVVRESNLKVEVVLSSQSLHVGGEEEEEEEEEEEEEEEEEEEEEEEDGKKIGKKRTRGESFSVSKIWLWSNKIKYNHHRSNNADADFPLSPITKKALLI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01893 351 Coils Coil 272 302 - -
Adu01g01893 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 181 IPR013083 -
Adu01g01893 351 MobiDBLite consensus disorder prediction 269 312 - -
Adu01g01893 351 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 24 330 - -
Adu01g01893 351 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Adu01g01893 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 24 330 - -
Adu01g01893 351 Pfam Ring finger domain 129 172 IPR001841 -
Adu01g01893 351 MobiDBLite consensus disorder prediction 275 298 - -
Adu01g01893 351 SUPERFAMILY RING/U-box 109 183 - -
Adu01g01893 351 CDD RING-H2_PA-TM-RING 129 172 - -
Adu01g01893 351 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01893 Adu-Chr1 81694810 81695865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01893 31 326 C3H Transcription Factor Family AT2G18650 40.356 2.74e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01893 - - gmx:100807741 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01893 01 81694810 81695865 Adu01g01893 01 81694810 81695865 ECH
Adu01g01893 01 81694810 81695865 Adu06g02532 06 100137249 100142112 ECH