Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01780 ATGAACCCCTACGATAACAGATACTCTGACGCCGCTTCTTATCGCAACCGTCGCAGCGATATCCTCGGTTCTGGACCATTCATGCCGCCTCCTGTTGTAGGTCGTGGTGCTGCGGTCCCCTACGGTGCCCCTCCGGTCCCTTATGGTGCAGGAAGAGGAGCTCCGAATGCCTTCGGGTCCTCGTCGGTAACTTCCTTTACGCCCCCTCCTGGTGGTTTCAATATAGGCCGAGGCGGTGGTGGACTTGGTAATGGCCATGCTGGTGGCAGAAAAGACGGCGGAGGTCGTTACGGTACTGGTGGAAGAGGTCGCGGAGGTACTGGTAGAAACGGCGGAACTGGTAGAGGCGGTGGAAGCGGTTTTAGGGGAGGCAGAAGTCATGGTGGTGGAAGAGGAGGAGGAGGTGGTAGACATGGTGGACGGTCATCGAAGGATGAATTGAACAAGATTTCCTTGCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGTGAGGGCCATGTCCGATCAAGAAGTGATGCATTATCGTGCCAGTAGAGAAATAACAGTGCAAGGCCATGATGTGCCGAAACCCATTCGGATGTTCCATGAGGCCAGGTTTCCTGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCCCAGGGTTGGCCGATGGCTCTTAAAGGCAGAGATTTGATTGGCATTGCGGAGACTGGCTCCGGCAAAACTTTGTCATATCTGCTTCCTGCTTTGGTGCATGTCAGTGCACAACCTCGACTGTCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTCGCAGGACGGGCAAATATTAGAACTACATGCATCTATGGTGGTGCACCAAAGGGACCTCAAATTCGTGACCTTCAAAGGGGTGTAGAGATTGTTATTGCTACACCAGGTCGCCTTATAGATATGCTGGAAGCTCAGCACACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCAAGGCAGTTCCTGCGCAACCCATATAAGGTAATTATTGGGTCACCGGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTGACAGATGCAGAGAAATATAACAGATTGATTAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAATTACAAGACAATTGAGGATGGATGGATGGCCAGCTCTATCCATCCATGGTGATAAAAACCAGGCTGAAAGAGACTGGGTTTTGGCTGAGTTTAAGAATGGTAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGGTAGGATCACTGTGTATTAA 1557 0.4823 MNPYDNRYSDAASYRNRRSDILGSGPFMPPPVVGRGAAVPYGAPPVPYGAGRGAPNAFGSSSVTSFTPPPGGFNIGRGGGGLGNGHAGGRKDGGGRYGTGGRGRGGTGRNGGTGRGGGSGFRGGRSHGGGRGGGGGRHGGRSSKDELNKISLPKQDFKNLVPFEKNFYVESPAVRAMSDQEVMHYRASREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPRLSHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRTTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNPYKVIIGSPELKANQSINQVVEVVTDAEKYNRLIRLLKEVMDGSRILIFMETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLAEFKNGRSPIMTATDVAARGLGRITVY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01780 518 MobiDBLite consensus disorder prediction 50 151 - -
Adu01g01780 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 512 IPR027417 -
Adu01g01780 518 CDD DEADc_DDX5_DDX17 215 409 - -
Adu01g01780 518 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 409 IPR014001 -
Adu01g01780 518 Pfam DEAD/DEAH box helicase 227 397 IPR011545 GO:0003676|GO:0005524
Adu01g01780 518 SMART ultradead3 222 425 IPR014001 -
Adu01g01780 518 Pfam Helicase conserved C-terminal domain 433 512 IPR001650 -
Adu01g01780 518 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 355 363 IPR000629 -
Adu01g01780 518 Gene3D - 416 513 IPR027417 -
Adu01g01780 518 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 518 IPR001650 -
Adu01g01780 518 MobiDBLite consensus disorder prediction 1 26 - -
Adu01g01780 518 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 203 231 IPR014014 GO:0003724
Adu01g01780 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 411 IPR027417 -
Adu01g01780 518 CDD SF2_C_DEAD 422 512 - -
Adu01g01780 518 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 512 - -
Adu01g01780 518 PANTHER LD32873P 77 512 - -
Adu01g01780 518 Gene3D - 176 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01780 Adu-Chr1 68847414 68851472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01780 200 512 Eukaryotic Initiation Factors Gene Family AT3G19760 33.439 2.01e-49 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01780 K12823 - gmx:100777610 701.049