Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01777 ATGAGATCCAGCAACAGATCTCATCGAAAGAACCTTTTCATTTTCTATTCCATCAGCTCATGTTTCCTTGTGTCTGCGCAATGGAGATGTACGGGCGATCCAGCGAGGGTTCCCGATCTGATCAATCATTGGAGTAGATCGGAATTTGACTCAAAGGAGAATGTAGGGTGTTGTGAAATGTGTCTGATCCTGATTTTGAACAATACAAAACCTACGTGGCAAATGGGATTGTGTGCTACAGAGAAATCTTATCCCCAAAGGCCTGGTGAGGCTGATTGTATCTACTATTTAAGGATTGAATTCTGTGTCTATGGTTCCCGCTGCCGTTTCAACCATCCCCGTGACCAGGCCATGGTTGTTGGTGCTATTGCTAGGACTGGAGGAGGGGAGTACACGGAGTGA 402 0.4602 MRSSNRSHRKNLFIFYSISSCFLVSAQWRCTGDPARVPDLINHWSRSEFDSKENVGCCEMCLILILNNTKPTWQMGLCATEKSYPQRPGEADCIYYLRIEFCVYGSRCRFNHPRDQAMVVGAIARTGGGEYTE 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01777 133 Gene3D - 73 127 - -
Adu01g01777 133 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Adu01g01777 133 SUPERFAMILY CCCH zinc finger 90 116 IPR036855 GO:0046872
Adu01g01777 133 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 70 133 - -
Adu01g01777 133 PANTHER PROTEIN PHOSPHATASE RELATED 70 133 - -
Adu01g01777 133 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 89 114 IPR000571 GO:0046872
Adu01g01777 133 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01777 Adu-Chr1 68306223 68307025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01777 82 133 C2H2 Transcription Factor Family AT5G18550 59.615 7.22e-16 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g01777 zf-CCCH 6.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01777 - - adu:110280992 288.885