Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01731 ATGAAGTGCATAAAGAACGAGACAAGTAGGCAAGTAACATTTTCAAAGAGAAGAAATGGTTTGCTTAAGAAGACTTTTAAGCTTTCAGTTCTCTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGCAAGCTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAGGAAGGTCAAGGATCTACATAGCCTCAACACCAAACAAATCCAAGAAAATACACAGGTAAAGGAAGGTGATGACATCAACATCACAAAGAAGCTAGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATTCATGCCCCATTGAAGAGTTACAACAGATAGAGAATCAGCTCGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATAGAGACGCTAAAGGAACAGGAAAAATGCCTTCTTGAAGAAAATAGAAAATTGAAAGAGAAGGTAATTATCTTTCCTCATGTACTTCATATTATCCCCAATTGA 534 0.382 MKCIKNETSRQVTFSKRRNGLLKKTFKLSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQRKVKDLHSLNTKQIQENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIETLKEQEKCLLEENRKLKEKVIIFPHVLHIIPN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01731 177 PANTHER MADS BOX PROTEIN 1 165 - -
Adu01g01731 177 SUPERFAMILY SRF-like 1 67 IPR036879 GO:0003677|GO:0046983
Adu01g01731 177 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Adu01g01731 177 ProSiteProfiles K-box domain profile. 81 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu01g01731 177 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Adu01g01731 177 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Adu01g01731 177 Coils Coil 115 164 - -
Adu01g01731 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Adu01g01731 177 Gene3D - 6 79 IPR036879 GO:0003677|GO:0046983
Adu01g01731 177 CDD MADS_MEF2_like 1 63 IPR033896 GO:0000977|GO:0045944
Adu01g01731 177 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Adu01g01731 177 Pfam K-box region 89 165 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu01g01731 177 PANTHER MADS-BOX PROTEIN SOC1 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01731 Adu-Chr1 60600081 60606910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01731 1 166 MADS-box Gene Family AT4G22950 62.651 6.02e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu01g01731 K-box 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01731 - - ahf:112805426 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01731 01 60600081 60606910 Adu01g01731 01 60600081 60606910 ECH