Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu01g01714 | ATGGCATCGTCATCATCAAACAACAGCGGCTACGATGTTCCCTGGGTTGAGAAGTACCGACCCTCTAAGGTCTCCGACGTCGTTGGCAACCAAGATGCCGTCTCCCGCCTTCAAGTCATCGCCCGAGACGGCAACATGCCCAATCTCATCCTCTCTGGTCCTCCTGGAACTGGTAAAACCACAAGCATACTAGCACTAGCTCATGAGCTTCTCGGTTCCAATTCCAAGGAAGCCGTTCTTGAGCTCAATGCTTCCGATGACCGTGGAATTGATGTCGTCCGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACTCTCCCTCCTGGCCGCCACAAGATTGTTATTCTCGATGAAGCTGATAGTATGACTTCGGGGGCTCAGCAAGCTTTGAGGAGGACAATGGAGATATACTCGAATACTACTCGGTTTGCCCTTGCTTGCAACACTTCCTCTAAGGTTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCGCGCTTGTCTGATGAGGAGATACTCAGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAACTTACAAGCAACATACAGTGGATTCCAGTTTGTTAACCAACAAAATGTTTTCAAGGTTTGTGACCAGCCGCATCCATTGCATGTGAAGAATATGGTGCGTAATGTTCTCGAAGGGAATTTCGATGAGGCTTGTTTGGGCCTCAAACAACTATATGACTTAGGATACTCCCCCACAGATATCATCACAACAATTTTCCGTATTATAAAAAATTATGATATGGCTGAGTATCTGAAATTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGGGTTGGTTCCTATCTTCAAATGTGTGGTCTATTGGCTAAGCTTTCTCTAGTCCGTGAAACAGCTAAAGCTGCATGA | 996 | 0.4568 | MASSSSNNSGYDVPWVEKYRPSKVSDVVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLSDEEILSRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQQNVFKVCDQPHPLHVKNMVRNVLEGNFDEACLGLKQLYDLGYSPTDIITTIFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRETAKAA | 331 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu01g01714 | 331 | Pfam | ATPase family associated with various cellular activities (AAA) | 49 | 167 | IPR003959 | GO:0005524|GO:0016887 | |
| Adu01g01714 | 331 | CDD | HLD_clamp_RFC | 170 | 232 | - | - | |
| Adu01g01714 | 331 | Gene3D | - | 7 | 170 | IPR027417 | - | |
| Adu01g01714 | 331 | SMART | AAA_5 | 45 | 177 | IPR003593 | - | |
| Adu01g01714 | 331 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 7 | 329 | - | - | |
| Adu01g01714 | 331 | CDD | AAA | 28 | 165 | - | - | |
| Adu01g01714 | 331 | Pfam | Replication factor C C-terminal domain | 235 | 320 | IPR013748 | - | |
| Adu01g01714 | 331 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 7 | 329 | - | - | |
| Adu01g01714 | 331 | Gene3D | - | 235 | 327 | - | - | |
| Adu01g01714 | 331 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 234 | 325 | IPR008921 | GO:0003677|GO:0006260 | |
| Adu01g01714 | 331 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 11 | 233 | IPR027417 | - | |
| Adu01g01714 | 331 | Gene3D | - | 171 | 234 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu01g01714 | Adu-Chr1 | 58738989 | 58742670 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu01g01714 | 10 | 330 | Core DNA Replication Machinery Family | AT1G63160 | 90.966 | 0.0 | 621 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu01g01714 | K10755 | - | qsu:111999495 | 614.379 |