Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01639 ATGGAACACACTGAATCCGATTCTGCTTCTTCCTCACTTCCCAATGGCGGTGGTGACTGCATCACCGCCACCCAACAAGACCCTCAACTTGCTCCTTCTTCCAATCACGGCACCGACGATCCTCAGCCGTCAGATCTCTATCAAACGGCTCAGGATGGTTCACTCTCGGCTGAGCTTCAGAGTAAGCTGGATTTGAAGGGTTTGGAAGGTGTGGGCGAAGAGGGTGGCGAGATTGGGGATAAAGTTTCAAACTTTGGCCAAGTTGGTGGTGGTGTTGATGATGGGGGTGTTACTAATGGTGACGATGAAGTTGTAAATGGTGGTGATGAGGGTTTTAAAGGTGGTGGTGCTGATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGTGGGTCTTGTGGATGGTGATTATGACGGGTTAGTTAATGAATATGTTGATGCTGATGGGGGTGATGATGTTGATGGGGTTGAGAATAGGGAAGAGAAAAGTGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCAGGATTGTGCATTTTATATGAAGACTGGGAATTGCAAATTTGGAATCAATTGCAAGTTCAATCACCCAATTAATAGGAGGAAAAACCAGGCTGTTAAAGAGCGGCCAGCAGAAAGAGAGGAAGAGCAAGCAGAGAGACCAGGACAGACAGAATGCAAGTATTATTTAAGGTCCGGGGGTTGTAAGTTTGGAAAAGATTGTAAATATAACCATACAAAAGGAAAAGATTTAACAACCGAGGAGGTGGCAGAACTCAATTTTCTTGGTCTGCCTATTCGTCTGTTTAATCATCCTGACCCTACAACTGTTGGAGGTTCTGAATCATCTCCAGGGAATGGAGGATCTGATCCTTCTTCACGGTATAGTAATGGACGATCTAATACTTCTTCAGGGTATAGTAATGGAGGATCTATTTCATTACGTGGTGTATCGCAGCAGTCTGTCTCAACATGGTCTTCTCCAAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCGCCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCACCTCCGCCATATGTCATGAACAATCCAGTGATCGAAACAAATGTTTATATACACCCACAAAAAAGAATTCAACTTGATGACTTTCCTGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAATGCCTGCATGCATTACACACGATACGGACTCTGTAAGTTTGGACCGGCTTGTAAGTATGACCATCCGATAAACCCAGTGCCCCCAACTGGTGTTGAAGTTGATGGGATGGGTGGAAATGGAGGTGCTGTTCAGTAA 1503 0.4544 MEHTESDSASSSLPNGGGDCITATQQDPQLAPSSNHGTDDPQPSDLYQTAQDGSLSAELQSKLDLKGLEGVGEEGGEIGDKVSNFGQVGGGVDDGGVTNGDDEVVNGGDEGFKGGGADGDNWGWETNSWEEENVNVGLVDGDYDGLVNEYVDADGGDDVDGVENREEKSGGGRAQHQYPWRPDAQDCAFYMKTGNCKFGINCKFNHPINRRKNQAVKERPAEREEEQAERPGQTECKYYLRSGGCKFGKDCKYNHTKGKDLTTEEVAELNFLGLPIRLFNHPDPTTVGGSESSPGNGGSDPSSRYSNGRSNTSSGYSNGGSISLRGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPPYVMNNPVIETNVYIHPQKRIQLDDFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKNACMHYTRYGLCKFGPACKYDHPINPVPPTGVEVDGMGGNGGAVQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01639 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872
Adu01g01639 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 408 433 IPR000571 GO:0046872
Adu01g01639 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 455 478 IPR000571 GO:0046872
Adu01g01639 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 255 IPR000571 GO:0046872
Adu01g01639 500 SUPERFAMILY CCCH zinc finger 180 210 IPR036855 GO:0046872
Adu01g01639 500 MobiDBLite consensus disorder prediction 153 177 - -
Adu01g01639 500 SUPERFAMILY CCCH zinc finger 233 257 IPR036855 GO:0046872
Adu01g01639 500 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Adu01g01639 500 SMART c3hfinal6 406 433 IPR000571 GO:0046872
Adu01g01639 500 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Adu01g01639 500 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Adu01g01639 500 SMART c3hfinal6 453 479 IPR000571 GO:0046872
Adu01g01639 500 PANTHER PROTEIN PHOSPHATASE RELATED 25 483 - -
Adu01g01639 500 MobiDBLite consensus disorder prediction 285 340 - -
Adu01g01639 500 SUPERFAMILY CCCH zinc finger 411 436 IPR036855 GO:0046872
Adu01g01639 500 MobiDBLite consensus disorder prediction 282 340 - -
Adu01g01639 500 Gene3D - 220 287 - -
Adu01g01639 500 Gene3D - 396 481 - -
Adu01g01639 500 MobiDBLite consensus disorder prediction 7 58 - -
Adu01g01639 500 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 25 483 - -
Adu01g01639 500 ProSiteProfiles Zinc finger C3H1-type profile. 452 480 IPR000571 GO:0046872
Adu01g01639 500 SUPERFAMILY CCCH zinc finger 454 481 IPR036855 GO:0046872
Adu01g01639 500 MobiDBLite consensus disorder prediction 213 232 - -
Adu01g01639 500 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Adu01g01639 500 ProSiteProfiles Zinc finger C3H1-type profile. 406 434 IPR000571 GO:0046872
Adu01g01639 500 MobiDBLite consensus disorder prediction 1 125 - -
Adu01g01639 500 Gene3D - 157 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01639 Adu-Chr1 51949271 51952683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01639 142 483 C3H Transcription Factor Family AT1G04990 32.092 7.37e-48 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu01g01639 zf-CCCH 1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01639 - - adu:107491206 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01639 01 51949271 51952683 Adu03g02111 03 41712265 41715850 ECH
Adu01g01639 01 51949271 51952683 Adu01g01639 01 51949271 51952683 ECH
Adu01g01639 01 51949271 51952683 Adu03g02111 03 41712265 41715850 PCT