Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01630 ATGACAACCACTTCCCTTCTCTTTCTCTTTCTCTTCTCTCTCCTCTTCCCGGCCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGCTCAAGAAGTGACCAGGCAAATCAATGCGTCTGTTGCTAGGAGGAACTTGGGGTACTTGTCTTGCGGGACAGGTAACCCAATCGACGACTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACAGACAGAGGCTTGCAGACTGCGCTATCGGCTTCGGGAAGAACGCCATTGGCGGAAGGGACGGAAAAATCTACGTGGTGACTGATTCTGCTGATGACAACCCAGTGAACCCCAAGCCGGGGACGCTTCGCTATGCAGTGATTCAGGACGAGCCCCTATGGATCATATTCGCAAGGGACATGGTGATTCAGTTGAAGGAAGAACTTATAATGAACTCCTTCAAGACCATAGATGGGAGAGGTGCTAGCGTGCACATTGCTGGTGGACCATGCATAACAATTCAGTATGTGAATAACGTTATAATACATGGTATTCACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCACGGCACTACGGGTGGAGGACTCTATCGGACGGTGATGGGGTCTCCATATTTGGCGGGAGCCACGTGTGGGTTGATCATTGCTCCTTGTCTAACTGCAGGGACGGTTTGATTGATGCCATTCACGGCTCCACCGCAATTACAATTTCTAACAATTACATGACGCACCATGATAAGGTTATGTTGTTGGGTCATAGTGATACATATACACAAGACAAGAATATGCAGGTTACTATTGCTTTTAACCACTTCGGTGAAGGCCTTGTTCAGAGAATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCCATTGGTGGAAGTGCCAACCCAACCATCAATAGCCAAGGCAACAGATTTGTAGCACCAAATGACAGGTTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAGGGGTTGGAATTGGAGGTCAGAAGGGGACTTATTGGTAAATGGTGCATTTTTCACTGCATCTGGTGCTGGAGCCTCTTCAAGTTATGCAAGGGCTTCAAGTTTGAGTGCAAGACCATCCACTCTTGTGGGCACTATAACAACTGGTGCAGGTGCACTCGTTTGTAAGAGGGGTTCTCGTTGCTGA 1218 0.4819 MTTTSLLFLFLFSLLFPALISSSPVQDPELVAQEVTRQINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSADDNPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVNNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWRGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSTLVGTITTGAGALVCKRGSRC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Adu01g01630 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Adu01g01630 405 Gene3D - 56 398 IPR012334 -
Adu01g01630 405 SMART amb_all 131 328 IPR002022 -
Adu01g01630 405 PANTHER PECTATE LYASE 4 402 - -
Adu01g01630 405 SUPERFAMILY Pectin lyase-like 38 399 IPR011050 -
Adu01g01630 405 Pfam Pectate lyase 139 322 IPR002022 -
Adu01g01630 405 PANTHER PECTATE LYASE 18-RELATED 4 402 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01630 Adu-Chr1 51205466 51207773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01630 5 405 Polysaccharide Lyase AT5G63180 82.134 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01630 K01728 - gmx:100101868 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01630 01 51205466 51207773 Adu03g02117 03 41772826 41776864 ECH
Adu10g00771 10 10069106 10072843 Adu01g01630 01 51205466 51207773 ECH
Adu03g02117 03 41772826 41776864 Adu01g01630 01 51205466 51207773 ECH
Adu01g01630 01 51205466 51207773 Adu01g01630 01 51205466 51207773 ECH
Adu01g01630 01 51205466 51207773 Adu03g02117 03 41772826 41776864 PCT