Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01617 ATGGCAACCATGCCTCTCTTCAAGTCCTTTACAATGGCATCACAATCATGGCTACTCTCTCCCCCGTCACTCTTTTACACCAAACCCAAACACTGCCCTTTTCACTCACTTCGTCATTCTTCTAGACTACTCAGATTTCAAGTTGCATCCTTCAATTCTTCTTCGTTCCTTTCACTTTCACGCTCTCTATGCCTCACCAACAGGACCATTCATCATTCTCCTATGCTCACCTTTGTCGCACAAGCGTCAGATTGGGCTCAGCAACAAGAAGTTGATTGTGAAGAAGAAGAAGCAACGTGGGAGAACGAAGGCGAACCCAAATGGGTAAACCAAGATGATGAAATTGAGGCTGTGATTGATGGTAGTGAGGGAGAAGGGGAAGGTGGGTTTGATGAAACTTCTGAGGATGCAAAACTCTTTGTTGGTAACTTGCCTTTTGATGTTGATAGCCAGAGACTTGCCATGCTCTTCGAGCAGGCCGGAACGGTGGAGATAGCCGAGGTAATTTACAATAGGGCAACCGATCGGAGTCGCGGGTTTGGATTTGTAACAATGAGTACAGTTGAGGAAGCTGACAGAGCTGTGGAGAAGTTCAGTGGCTATGAGTTAGATGGAAGAACGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCGCAGCCGGAGCGGTCACCGCGCACCTTTGATTCCTCGTTAAGAGTATATGTTGGTAACTTGCCTTGGGATGTTGATAATATTCGACTAGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGCAAGCTCGGATAGTGTATGACAGAGAGACTGGTAGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGCTTGGATGGGCGGTCACTCAGAGTGAGTGTTGCTGAGGAGAGGCCCAGACGCAGCTTCTGA 948 0.4705 MATMPLFKSFTMASQSWLLSPPSLFYTKPKHCPFHSLRHSSRLLRFQVASFNSSSFLSLSRSLCLTNRTIHHSPMLTFVAQASDWAQQQEVDCEEEEATWENEGEPKWVNQDDEIEAVIDGSEGEGEGGFDETSEDAKLFVGNLPFDVDSQRLAMLFEQAGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADRAVEKFSGYELDGRTLTVNKAAPRGSQPERSPRTFDSSLRVYVGNLPWDVDNIRLEQIFSEHGKVEQARIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRSLRVSVAEERPRRSF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01617 315 CDD RRM_HP0827_like 232 308 - -
Adu01g01617 315 SMART rrm1_1 232 305 IPR000504 GO:0003723
Adu01g01617 315 SMART rrm1_1 138 211 IPR000504 GO:0003723
Adu01g01617 315 SUPERFAMILY RNA-binding domain, RBD 134 225 IPR035979 GO:0003676
Adu01g01617 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Adu01g01617 315 SUPERFAMILY RNA-binding domain, RBD 225 313 IPR035979 GO:0003676
Adu01g01617 315 Gene3D - 80 219 IPR012677 -
Adu01g01617 315 Gene3D - 220 314 IPR012677 -
Adu01g01617 315 CDD RRM_HP0827_like 138 215 - -
Adu01g01617 315 PANTHER OS02G0815200 PROTEIN 5 314 - -
Adu01g01617 315 PANTHER RIBONUCLEOPROTEIN 5 314 - -
Adu01g01617 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Adu01g01617 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Adu01g01617 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01617 Adu-Chr1 50237198 50240920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01617 107 313 Eukaryotic Initiation Factors Gene Family AT3G16380 31.019 1.39e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01617 - - gmx:100804984 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01617 01 50237198 50240920 Adu03g02126 03 41869911 41872479 ECH
Adu01g01617 01 50237198 50240920 Adu01g01617 01 50237198 50240920 ECH
Adu01g01617 01 50237198 50240920 Adu03g02126 03 41869911 41872479 PCT