Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01602 ATGAATGTTGAAAAATTTGAGGACAAATACAACTCAAAGTATGTGGGGTTAACACAATGCTGGGGGAACGAAATCCATTTGTTCAACAAGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCATCTTGATGAAAGTGAAAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAAATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGTTTGAGCTCATGCTTGTTTTGGAGAATGTGCACTCAAACACTCAGCTTCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATCTTAATGATGATGAAGGTGGTGGCTTGGAAATCCACTTTAGTTAGAAGGGTGCTGCTGTCAATATGTTCATTGCTAACAGGTCCTGCTGTCAATATGGATGAAGTAGCACTACCACAGAACAAAAATGCTAAGAAGAAAAAGAGTAAGATAGAGAACAAGAGAAGGTTCAGTGATGAGCAAATTAGATCACTTGAGTGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAAGAAAAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAATCACAAGTTTAGTTAAGGATATAGTTGGTAGAGACGGAGATCGCAGCCGTGGCCGAGGCCGAGGCCGAAAGGGGAGCCTCAAATTCACATCATGCCTACTCCGGGTGTGCCAAGATCATGCACTCAACAAGCCAATAAATCTTCCAACACTGCCTCACATGGTGTGCAGAGTGATCCaagctatttaa 798 0.4273 MNVEKFEDKYNSKYVGLTQCWGNEIHLFNKVFEAFGQVELVQLHLDESENCKGFGFVQFARLENARNAQSLNGQLEIGGRTIKFELMLVLENVHSNTQLLECKKLEEILVILMMMKVVAWKSTLVRRVLLSICSLLTGPAVNMDEVALPQNKNAKKKKSKIENKRRFSDEQIRSLECIFESESKLEPKKKIQLARDLGLQPRQITSLVKDIVGRDGDRSRGRGRGRKGSLKFTSCLLRVCQDHALNKPINLPTLPHMVCRVIQAI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01602 265 Gene3D - 145 207 - -
Adu01g01602 265 SUPERFAMILY RNA-binding domain, RBD 29 86 IPR035979 GO:0003676
Adu01g01602 265 SMART rrm1_1 14 85 IPR000504 GO:0003723
Adu01g01602 265 Gene3D - 22 99 IPR012677 -
Adu01g01602 265 CDD homeodomain 164 204 IPR001356 GO:0003677
Adu01g01602 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 89 IPR000504 GO:0003723
Adu01g01602 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 83 IPR000504 GO:0003723
Adu01g01602 265 SUPERFAMILY Homeodomain-like 153 205 IPR009057 -
Adu01g01602 265 Coils Coil 151 171 - -
Adu01g01602 265 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 150 204 - -
Adu01g01602 265 Pfam Homeodomain 164 205 IPR001356 GO:0003677
Adu01g01602 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 150 204 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01602 Adu-Chr1 49557761 49561575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01602 152 205 Homeobox Transcription Factor Family AT2G46680 64.815 1.53e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Adu01g01602 RRM_1 3.2e-10 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01602 K13091 - gmx:100789839 98.9821