LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu01g01501	ATGAACACCTTCTCCCACGTACCTCCAGGCTTTCGTTTTCATCCGACTGATGAAGAATTAGTTGACTACTACCTTAGGAAAAAGGTAGCATCCAAAAAGATTGATCTAGATGTCATCAAAGACGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGATACTGCAGAACTATGCAAAATAGGAAGCGATGAAGAAAATGACTGGTATTTCTTCAGTCATAAAGATAAGAAGTACCCAACAGGAACAAGAACGAATAGGGCAACAAAAGCAGGGTTTTGGAAAGCCACGGGAAGAGATAAAGCAATATACTCAAAGCAGCATTGCCTTATTGGAATGAGAAAGACTCTTGTCTTCTACAAAGGAAGAGCTCCTAATGGCCACAAGTCTGATTGGATCATGCATGAGTATCGCCTTGAAACCAATGATTCACTCTTAATATAA	444	0.3941	MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKKIDLDVIKDVDLYKIEPWDLQDTAELCKIGSDEENDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQHCLIGMRKTLVFYKGRAPNGHKSDWIMHEYRLETNDSLLI	147

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu01g01501	147	Pfam	No apical meristem (NAM) protein	8	139	IPR003441	GO:0003677\|GO:0006355
	Adu01g01501	147	SUPERFAMILY	NAC domain	5	144	IPR036093	GO:0003677\|GO:0006355
	Adu01g01501	147	ProSiteProfiles	NAC domain profile.	7	147	IPR003441	GO:0003677\|GO:0006355
	Adu01g01501	147	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 7-LIKE	4	142	-	-
	Adu01g01501	147	Gene3D	NAC domain	16	145	IPR036093	GO:0003677\|GO:0006355
	Adu01g01501	147	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	4	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu01g01501	Adu-Chr1	42011273	42012273	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu01g01501	1	144	NAC Transcription Factor Family	AT1G12260	85.417	3.63e-90	264

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Adu01g01501		NAM	2.4e-39	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu01g01501	-		-	aip:107606832	292.737

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu05g00996	05	13126411	13131411	Adu01g01501	01	42011273	42012273	PCT