Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu01g01473 | ATGAATGGCAGGCACAAGGTTGAGAAAAAAGGAGCTTCGGAGATTGTTCCAGATTATCCAATTCTTTATGTTGACGACCTAGCAGATCAAATAGCCGAGTTGTTCGTTTTGAGAAGGCAATCTGACCCCAACATTCTTTTTGTCTGCAGTCTTAGTGCAGTAATGTGCATGGGAGTAGCTGTCGGGGCTTACATTCTTACCTTATTTGCTGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAGATGTTATGTCCGTGCACCCGTGCCCTGATGTGAAGTATGGGAAACGTGTGCACATTCTACCTATTGATGATACCATTGAAGGTGTAACTGGCAATCTATTTGATGCTTTCTTGAAACCTTACTTCTTGAAAGCTTATCGTCCTGTCAGAAAAAGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTGTGAAGTTTAAGGTCATTGAAACTGATCCTAGGGAGTACTGTATGGTTGCTCCAGATACTGAAATCTTCTATGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCAGGATGAAGTTGGATATGATGATGTGGGTGGAGTCAGGAAACAAATGGCACAAATTCGTGAGTTGGTAGAGCTTCCCTTGAGGCATCCACAACTCTTTAAGTCGATTGGTGTGAAACCACCCAAAGGAGAGAGTGAAACCAATCTGAGGAAAGCATTTGAAGTGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCATGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCAGCATTGA | 978 | 0.4335 | MNGRHKVEKKGASEIVPDYPILYVDDLADQIAELFVLRRQSDPNILFVCSLSAVMCMGVAVGAYILTLFAGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVMSVHPCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLKAYRPVRKRDLFLVRGGMRSVKFKVIETDPREYCMVAPDTEIFYEGEPLKREDEERQDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGESETNLRKAFEVAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSHAHVIVIGATNRPNSIDQH | 325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu01g01473 | 325 | SMART | CDC48_N_2 | 33 | 118 | IPR003338 | - | |
| Adu01g01473 | 325 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 211 | 324 | IPR027417 | - | |
| Adu01g01473 | 325 | SUPERFAMILY | ADC-like | 54 | 115 | IPR009010 | - | |
| Adu01g01473 | 325 | Pfam | ATPase family associated with various cellular activities (AAA) | 249 | 324 | IPR003959 | GO:0005524|GO:0016887 | |
| Adu01g01473 | 325 | Gene3D | - | 214 | 248 | IPR027417 | - | |
| Adu01g01473 | 325 | Gene3D | - | 118 | 213 | - | - | |
| Adu01g01473 | 325 | PANTHER | AAA-FAMILY ATPASE | 249 | 323 | - | - | |
| Adu01g01473 | 325 | SMART | CDC48_2_2 | 135 | 201 | IPR004201 | - | |
| Adu01g01473 | 325 | Gene3D | - | 251 | 324 | IPR027417 | - | |
| Adu01g01473 | 325 | PANTHER | AAA-FAMILY ATPASE | 68 | 249 | - | - | |
| Adu01g01473 | 325 | Pfam | Cell division protein 48 (CDC48), domain 2 | 137 | 198 | IPR004201 | - | |
| Adu01g01473 | 325 | PANTHER | CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E | 68 | 249 | - | - | |
| Adu01g01473 | 325 | SUPERFAMILY | Cdc48 domain 2-like | 117 | 209 | IPR029067 | - | |
| Adu01g01473 | 325 | Pfam | Cell division protein 48 (CDC48), N-terminal domain | 71 | 116 | IPR003338 | - | |
| Adu01g01473 | 325 | Pfam | Ndr family | 9 | 89 | IPR004142 | - | |
| Adu01g01473 | 325 | PANTHER | CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E | 249 | 323 | - | - | |
| Adu01g01473 | 325 | CDD | AAA | 252 | 323 | - | - | |
| Adu01g01473 | 325 | Gene3D | - | 31 | 117 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu01g01473 | Adu-Chr1 | 39260639 | 39263494 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu01g01473 | 209 | 324 | Calmodulin-binding Proteins | AT3G56690 | 36.709 | 5.42e-20 | 89.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu01g01473 | K13525 | - | aip:107621123 | 461.84 |