Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Adu01g01420 | ATGGAGAGACAGAAATGCTGCAAGCTCTGCTCAAGAACCTTCCCTAATGGAAGAGCCCTAGGTGGCCACATGAAGGCTCACTTGGCCACTTTTCCTCTCCCCCCTAAACCCCCTCAACCACCAGCACCACCATTACCTTCTTCTGAATCCTCCTCTTCATTTTCCTCCTTCTCAGAATCGGAACCCGAAGACAAGACTGCTTTGATTTATGGGTTGAGGGAGAATCCCAAGAAGAGTTTCAGAGTCGCAGATCCCGAGTTCTCTCCCTTGGCTGCACCACTTCTACCGCCACCTGACTCTGTTGCGGTTCAAGACAGAGAGAGCGAGACAGAGTCATCAAAGAAACCAACTCGCCAACGATCCAAGCGAACTTGGAGAGCAAGGTCCATTCTTCACAACCATGAAGACGACAAAGAACAGCTTAAGAAGAAGCAGCCCAAGCTTGGATTTATGGAACATGAACATGAATATGAAGCAGAACCGGTGAGCTCAGTCTCGGAAACTTCAGTAGTGGAAGACGTCGCCATGTTCCTGGTTATGCTCTCAAGGGACACGTGGTCCAACAAAGATGCAATACTAGTAAAACAAGAAGGAGAAGTTGAAAGATCAAAGGCTGGGAGCGGCAATGGGATCAAGATGAAGAAGGTTCGTGTTCGCGGGAAGCATAGTCATCAGTGTGAGAATTGCGGTAAAACTTTTCGATCTTCGAGGGCGTTGGGAAGTCATAGGAGCATATGCTGTGACGGAGGAGGATCAGGAGCAAGTGATAGAATCTTCCAATGCCCGTTTTGTTTCAAAATCTTTGGCTCTGGCCAAGCCCTTGGCGGTCACAAGAGATCTCATCTCATCGCCATGGCGGCACCTTCCTCCTCTTCTTCCACTGCCAAGAATTTCATAGATCTCAACTTGCCTGCTCCACTAGAAGAACAACATGAAGATGACCTTGGTGTTGTTTCGGATGTTTCCTATACTTGA | 975 | 0.4831 | MERQKCCKLCSRTFPNGRALGGHMKAHLATFPLPPKPPQPPAPPLPSSESSSSFSSFSESEPEDKTALIYGLRENPKKSFRVADPEFSPLAAPLLPPPDSVAVQDRESETESSKKPTRQRSKRTWRARSILHNHEDDKEQLKKKQPKLGFMEHEHEYEAEPVSSVSETSVVEDVAMFLVMLSRDTWSNKDAILVKQEGEVERSKAGSGNGIKMKKVRVRGKHSHQCENCGKTFRSSRALGSHRSICCDGGGSGASDRIFQCPFCFKIFGSGQALGGHKRSHLIAMAAPSSSSSTAKNFIDLNLPAPLEEQHEDDLGVVSDVSYT | 324 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Adu01g01420 | 324 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 224 | 245 | IPR013087 | - | |
Adu01g01420 | 324 | Gene3D | Classic Zinc Finger | 218 | 294 | - | - | |
Adu01g01420 | 324 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 27 | IPR013087 | - | |
Adu01g01420 | 324 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 261 | 281 | IPR013087 | - | |
Adu01g01420 | 324 | MobiDBLite | consensus disorder prediction | 104 | 118 | - | - | |
Adu01g01420 | 324 | MobiDBLite | consensus disorder prediction | 31 | 47 | - | - | |
Adu01g01420 | 324 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 320 | IPR044303 | GO:0006355 | |
Adu01g01420 | 324 | MobiDBLite | consensus disorder prediction | 88 | 129 | - | - | |
Adu01g01420 | 324 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
Adu01g01420 | 324 | Pfam | C2H2-type zinc finger | 6 | 29 | - | - | |
Adu01g01420 | 324 | Pfam | C2H2-type zinc finger | 259 | 282 | - | - | |
Adu01g01420 | 324 | SUPERFAMILY | beta-beta-alpha zinc fingers | 6 | 243 | IPR036236 | - | |
Adu01g01420 | 324 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 320 | - | - | |
Adu01g01420 | 324 | MobiDBLite | consensus disorder prediction | 28 | 72 | - | - | |
Adu01g01420 | 324 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 5 | 32 | IPR013087 | - | |
Adu01g01420 | 324 | SMART | c2h2final6 | 5 | 27 | IPR013087 | - | |
Adu01g01420 | 324 | SMART | c2h2final6 | 259 | 281 | IPR013087 | - | |
Adu01g01420 | 324 | SMART | c2h2final6 | 224 | 244 | IPR013087 | - | |
Adu01g01420 | 324 | Pfam | Zinc finger, C2H2 type | 224 | 244 | IPR013087 | - | |
Adu01g01420 | 324 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 259 | 281 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Adu01g01420 | Adu-Chr1 | 36493839 | 36495059 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Adu01g01420 | 1 | 310 | C2H2 Transcription Factor Family | AT1G02030 | 35.152 | 2.60e-40 | 140 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Adu01g01420 | zf-C2H2_6 | 6.2e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Adu01g01420 | - | - | adu:107486002 | 592.808 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Adu05g01018 | 05 | 13570144 | 13570954 | Adu01g01420 | 01 | 36493839 | 36495059 | PCT |