Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01344 ATGGTGGATAAGCGGCACAAAGTTCCTGCCGTCCGTGATTTCCCGAAAGGGTGTGGCTCAAACCCTTCAAGAACCGCACACGGTGATGCTGTAAAGGTTGTCCCTGGGAACCAGTATAAACGGGTTCCGGCTTTTAGAGACTTTCCTCCTTTGTGTGGACCAGATGCTTCTTCACATCTTAGTGAAGGTAAGGGTGAAACAGCAATTGATGCAGAAGAACAGGTGGAAAAGAATGTTCATTGTGATGGTGGAAAGGTACTGGATCTAGTTCAAGGTGATTCTGGTGGGAATGGTGTAGAAAAAGAGAAGGAGCTTGATGTAATTCGAACATGTGTTACGGTTCCTAAGGATGGCAACCGGGATAAGGTTGAAATGAATTCTTATAATTTGAAGGTTTCATCTCGCAGGGTGGTGCTAGCACTGATGTCTGAATCTGAATGTCCATGGAGGAATGCTGCAAGAAAAAAGGGAAAGAAACCTTTAAAGAAGAAAACGGGGAATGATAATTCTGAAAACATTGATGAATTTCAAGTTGTCAACAAATCACATGGTTCCAAGGCGGTTTATAGAAAGCTTGTACACGAAGAAGAAGCGAAGCTAGAAGGTAAGGCAAGTAGCTTTAGGAGTGTTGATTTACGAGCAGCTGAGATCCTTATGGGCAAAGGGAAATATCTTAACACCAACAGGATATTGGGATCTGTCCCTGGGGTCGAAGTTGGCGACGAATTTCAGTATAGGGTAGAGCTTGCCATGGTTGGCCTACATCAGCGGATTCAAAGCGACATAGATTATGTTAAGCATAATGGGAAGACCCTCGCCATGAGTGTTATCACATTGGGAGGCTATGAGGACGAGTTAGATGATTCAAATGTCTTGATATACACAAGTTTGGTTGGAAATAATACTGATAAAGAAGTCGAAGATCAGAAGCTTGAGCAGTGCAACCGTGCTTTAAGGAACAGCATTGAGGAAAAGAATCCTGTTAGGGTGATAAGGGCCACTGAATCAATGCACGGAAAGGATAAGAAATATGTCTATGATGGACAATATGTGGTTGAGAATTGCTGGCAGGATGAGGGGCTGCACGGTTCGCCGATTCTTAGATATCGGCTGCAAAGGATCCCAGATCAACCGGAGCCTTCTTGGAAAGAAGTAAAGAAATCTGAAAATTTGAGAGATAGAGAAGGTCTATTTGTTCATGACATTTCAAATGGGAAAGAGCTAATTCCAATTCATGCTCTCAACACCATAGATGACCAAAATGTTCCATCATTTGTGTATGTTACAAGAATGATATATCCAAATTGGTGCAATCCTATTCCTCGGAAAGGCTGTAATTGTGTTGGAACATGTTCAGAATCAGAGAAATGTCCTTGTGCTGCGAAAAATGGTGGTGATATCCCATTCAACCATGATGGGGCCATTGTAGAAGCAAAGCCTCTAATCTATGAGTGTGGACTTTCTTGCAAGTGCCCTTCAACATGCCACAATAGAGTTAGCCAACATGGTGTGAAGTTCCAACTCGAAGTCTTCAAAACCGATTCAAGAGGTTGGGGTGTGAGATCATTGAATTCAATCCCTTCAGGGAGTTTTATCTGTGAGTATCTGGGGGAGCTTCTTGGAGAGGATGAAGCTGAAGAAAGAGTTGACAATGATGAGTATCTTTTCGATATCGGCAATAATAACCAAAAGAGCCATGCCCTTTGGGATGAACTCTCAGTGGTTATGCCTGATGCACACTCAAATTCTTCTTGTGAAGTTGTGGAGGATGGTGGATTCACCATTGATGCTGCACACTATGGTAATGTTGGAAGATTCATCAACCATAGTTGCTCACCTAATCTGTATGCACAGAGTGTGCTTTATGATCATGATGATAAGAGGATTCCCCACATAATGCTGTTTGCGACTGAAAATATTCCACCATTGCAAGAGTTGACTTATGATTACAATTACAAGATAGATGAGGTTTTTGACTCTCATGGGAACATCAAGAGGAAGAATTGCTATTGTGGTTCCATGGAATGCACTGGTAGGATGTATTGA 2046 0.4233 MVDKRHKVPAVRDFPKGCGSNPSRTAHGDAVKVVPGNQYKRVPAFRDFPPLCGPDASSHLSEGKGETAIDAEEQVEKNVHCDGGKVLDLVQGDSGGNGVEKEKELDVIRTCVTVPKDGNRDKVEMNSYNLKVSSRRVVLALMSESECPWRNAARKKGKKPLKKKTGNDNSENIDEFQVVNKSHGSKAVYRKLVHEEEAKLEGKASSFRSVDLRAAEILMGKGKYLNTNRILGSVPGVEVGDEFQYRVELAMVGLHQRIQSDIDYVKHNGKTLAMSVITLGGYEDELDDSNVLIYTSLVGNNTDKEVEDQKLEQCNRALRNSIEEKNPVRVIRATESMHGKDKKYVYDGQYVVENCWQDEGLHGSPILRYRLQRIPDQPEPSWKEVKKSENLRDREGLFVHDISNGKELIPIHALNTIDDQNVPSFVYVTRMIYPNWCNPIPRKGCNCVGTCSESEKCPCAAKNGGDIPFNHDGAIVEAKPLIYECGLSCKCPSTCHNRVSQHGVKFQLEVFKTDSRGWGVRSLNSIPSGSFICEYLGELLGEDEAEERVDNDEYLFDIGNNNQKSHALWDELSVVMPDAHSNSSCEVVEDGGFTIDAAHYGNVGRFINHSCSPNLYAQSVLYDHDDKRIPHIMLFATENIPPLQELTYDYNYKIDEVFDSHGNIKRKNCYCGSMECTGRMY 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01344 681 Pfam Pre-SET motif 402 498 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Adu01g01344 681 SMART preset_2 399 490 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Adu01g01344 681 Pfam SET domain 517 651 IPR001214 GO:0005515
Adu01g01344 681 Pfam SAD/SRA domain 231 377 IPR003105 -
Adu01g01344 681 ProSiteProfiles YDG domain profile. 232 373 IPR003105 -
Adu01g01344 681 Gene3D - 214 393 IPR036987 -
Adu01g01344 681 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 186 680 - -
Adu01g01344 681 SUPERFAMILY PUA domain-like 214 388 IPR015947 -
Adu01g01344 681 SUPERFAMILY SET domain 393 658 IPR046341 -
Adu01g01344 681 ProSiteProfiles Post-SET domain profile. 665 681 IPR003616 -
Adu01g01344 681 Gene3D SET domain 394 681 IPR046341 -
Adu01g01344 681 SMART G9a_1 227 377 IPR003105 -
Adu01g01344 681 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 186 680 - -
Adu01g01344 681 SMART set_7 506 657 IPR001214 GO:0005515
Adu01g01344 681 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 69 681 IPR025794 GO:0016571
Adu01g01344 681 ProSiteProfiles Pre-SET domain profile. 443 503 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Adu01g01344 681 MobiDBLite consensus disorder prediction 1 29 - -
Adu01g01344 681 ProSiteProfiles SET domain profile. 506 651 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01344 Adu-Chr1 33010045 33012276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01344 187 678 Su(var)3-9 homologs AT5G04940 38.614 7.33e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Adu01g01344 SAD_SRA 6e-43 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01344 K11420 - adu:107484449 1360.9