Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01341 ATgaaaaagaatgaggtgaagaagatgtgggagaatgaggagcgaaggagttgcaagAGCGACGCTCAGCAACTCTTCCAGCGCGACGCCCAGACCATCACCCCGGAGGCTCTCGAGAGCGTGAAGGCCGCCATAGCCAGCAGCGACGTCGACCACAAGACCGACGCGAAGCGGAAGGCAGTTCCCCGCCGTGCCGCTGGGCAGACGTGGGAGGATCCCTCGCTGGCCGAGTGGCCGGAGAACGACCATCGCTTGTTCTGCGGCGATCTAGGGAACGAGGTGAACGACGACGTTTTGTCGAAGACGTTCACAAGATTCCCTTCGTTTAACATGGCGAGAGTTGTGAGGGACAAGCGATCAGGGAAGACCAAAGGGTACGGATTCGTGAGCTTTGCGGACCCTTCGGACCTCGCTGTGGCTCTGAAGGAGATGAACGGGAAGTACGTTGGGAACAGGCCAATCAAGCTATGCAAGAGCAAGTGGAAGGAGAGGACCGATTATGATGCTGTTGATAAGCAGAAGAAGCACTCCAAGAAGAAGTTGAAGTCTTCCTCCAAGCTATATATGTTTTATTTGAACCTCTCTAGTGCGCAAGAGGTTTCATTAGTTTTTACTAGACGTCTATACATTGGATGCCCAGATCGTTCAAGTTTTGGGGAATCTAGATCAATCTTAGCTGTCAAGAATCAGGAAATTATGGCTAACGTTATCTTTACTTTGCATTGCCTAACGGACTGCCCGATCTCCAGGAGATTATGGCTTTATCATGGGTTGGGTCTTTGGTGA 786 0.4822 MKKNEVKKMWENEERRSCKSDAQQLFQRDAQTITPEALESVKAAIASSDVDHKTDAKRKAVPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKTFTRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAVDKQKKHSKKKLKSSSKLYMFYLNLSSAQEVSLVFTRRLYIGCPDRSSFGESRSILAVKNQEIMANVIFTLHCLTDCPISRRLWLYHGLGLW 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01341 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Adu01g01341 261 MobiDBLite consensus disorder prediction 1 31 - -
Adu01g01341 261 MobiDBLite consensus disorder prediction 51 70 - -
Adu01g01341 261 MobiDBLite consensus disorder prediction 51 65 - -
Adu01g01341 261 MobiDBLite consensus disorder prediction 1 22 - -
Adu01g01341 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Adu01g01341 261 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 186 - -
Adu01g01341 261 SUPERFAMILY RNA-binding domain, RBD 66 163 IPR035979 GO:0003676
Adu01g01341 261 CDD RRM_RBM42 77 159 IPR034215 -
Adu01g01341 261 Gene3D - 2 169 IPR012677 -
Adu01g01341 261 SMART rrm1_1 84 157 IPR000504 GO:0003723
Adu01g01341 261 PANTHER RNA-BINDING PROTEIN 42-LIKE 18 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01341 Adu-Chr1 32860834 32864661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01341 85 165 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 1.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01341 K25079 - adu:107484659 319.701