Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01303 ATGGATCAATTGTCAGCTATCAGTGAGGAACTCGCAGAGATCGATGGCCGCATAGCCGATAATTTCCGCTCTCTAGCGAATGGCTTCCAGAAGCTTGACAAGATTAAAGATTCCAGCAGGCAGAGCAGGCAGCTCGAAGACCTCACTGACAAAATGCGCGACTCCAAACGTCTTATAAAAGAGTTCGATAAAGAGGTGAAAGCTTTGGAGGCTAATTTTGACAGAGAAACCACCAAAATGTTGAATGACAAGAAGCAGTCCATGATCAAAGAGCTCAATTCATATGTCGCTTTGAAAAAACAATATGCTTCAAATATTGAGAATAAGAAAATTGAGCTGTTTGAGGGAGCCAATGAAGGTTTTGCAGAAGAAAATGTCTTGTTAGCATCTTCAATGACAAATCAACAGCTAATGGATAATGGGAATCGGATGATGGATGAGACAGATCAAGCCATTGAGAGGGGAAAGAAGGTTGTTCAAGAAACAATAACTGTCGGTACAGAGACTGCAGCAGCTCTGAAGGCTCAGACAGAACAAATGAGCAGAATTGTCAATGAATTGGATTCTATCCATTTCTCTATAAAGAGAGCCTCTCAGTTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGGGATTACTTTTCCTTATTGTAGCTGGAGTAGTTGCTATCATTATTGTAAAGCTTGTACACCCAAACAACAAGGACATCCGAGACATTCCCGGATTAGCTCCTCCAGCCATGAACAGAAGACTGCTTTGGAGTCAAAGTCACAAAAGAAAGGTAGAGATCTCATTGCTCACCACATTTCTTGATTCGACGTCAACAGAATCGAAGTATCGCCAGTGCGGTTTCAAGGAGGTGGAATGCGATGGTGGAATGAGCATGATAATGGGTTTGTCACTGGAAAAAAGTGAATCTGAGTTAGGCATTTCAAACAATGATATTGTTGACGAGGATGATTTTGGAAAAGCTGACTTGTTCTTGGATGAGGATAGTCGTCAGTATGAAGATGTGACTAGATTAGACAGGAAGAGAACCCACAGGCCTAAGACACGCACGAACTACCAGGCCTTGATGTCCGTATACCTTGATAAGGGGAGCCCAATTTGGAAGGTTCAGAAAGTAACCCTCAAGCATAACCATGAATTGATGCCTTGGGAAATGGTTCACATGATCCCAAGTTTCCATGTGATATCTGGGTCCGCAAAGGCCTACATTGATGGCATGCATGCGTATGGGTTGCCGACATCTAAGATACTCGGTTACATGGTCGGGATTGCGGGTGGTTATTCTTTTTTGGGGTTTACCAAGAAGGACGCATACAACTACATTTATCGTAGCGCGTAA 1362 0.4295 MDQLSAISEELAEIDGRIADNFRSLANGFQKLDKIKDSSRQSRQLEDLTDKMRDSKRLIKEFDKEVKALEANFDRETTKMLNDKKQSMIKELNSYVALKKQYASNIENKKIELFEGANEGFAEENVLLASSMTNQQLMDNGNRMMDETDQAIERGKKVVQETITVGTETAAALKAQTEQMSRIVNELDSIHFSIKRASQLVKEIGRQVATDKCIMGLLFLIVAGVVAIIIVKLVHPNNKDIRDIPGLAPPAMNRRLLWSQSHKRKVEISLLTTFLDSTSTESKYRQCGFKEVECDGGMSMIMGLSLEKSESELGISNNDIVDEDDFGKADLFLDEDSRQYEDVTRLDRKRTHRPKTRTNYQALMSVYLDKGSPIWKVQKVTLKHNHELMPWEMVHMIPSFHVISGSAKAYIDGMHAYGLPTSKILGYMVGIAGGYSFLGFTKKDAYNYIYRSA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01303 453 SUPERFAMILY SNARE fusion complex 132 205 - -
Adu01g01303 453 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 250 - -
Adu01g01303 453 SMART tSNARE_6 137 204 IPR000727 -
Adu01g01303 453 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Adu01g01303 453 Coils Coil 45 79 - -
Adu01g01303 453 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Adu01g01303 453 PANTHER NOVEL PLANT SNARE 11 1 250 - -
Adu01g01303 453 Pfam Sec20 151 223 IPR005606 GO:0005484|GO:0006890
Adu01g01303 453 Gene3D - 133 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01303 Adu-Chr1 30875271 30884280 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Adu01g01303 Sec20 1.9e-06 CL0147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01303 K08494 - gmx:100786429 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01303 01 30875271 30884280 Adu01g01303 01 30875271 30884280 ECH