Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01224 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCGGCTCCACATACTCCTCCATCCGCAAATGGTCAACAGAGTCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTGCTCTATCCGGTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTCACCGCCGTGCCGCCTCCCGGAACGGAAATGGCCCAGTTAATCTGTGGAGGCTGCCATACATTACTAATGTACATCCGTGGCGCAACAAGTGTCCAATGCTCATGCTGTCACACTGTGAATCTAGCCATGGAAGCAAATCAGGTGGCACATGTCAATTGTGGCAGCTGCAGGATGCTACTGATGTACCAATATGGAGCAACATCTGTTAAATGTGCAGTTTGCAATTTTGTAACTTCAATTGGGGCATCAACAAGCATCACAGAGCAGAAGTTCAGCAACTAA 441 0.4853 MPVPLAPYPTPPAPHTPPSANGQQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGSCRMLLMYQYGATSVKCAVCNFVTSIGASTSITEQKFSN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01224 146 Pfam LSD1 zinc finger 29 53 IPR005735 -
Adu01g01224 146 Pfam LSD1 zinc finger 68 92 IPR005735 -
Adu01g01224 146 Pfam LSD1 zinc finger 106 130 IPR005735 -
Adu01g01224 146 SUPERFAMILY Multiheme cytochromes 29 127 IPR036280 -
Adu01g01224 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Adu01g01224 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Adu01g01224 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 132 IPR005735 -
Adu01g01224 146 PANTHER PROTEIN LSD1 1 143 IPR040319 -
Adu01g01224 146 PANTHER PROTEIN LOL1 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01224 Adu-Chr1 26891142 26893670 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Adu01g01224 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01224 - - rcu:8284618 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00518 05 5446760 5448975 Adu01g01224 01 26891142 26893670 PCT