Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01200 ATGATGCAAATCTCCTCCACCAACAAGTACTTGCCTGAATTTGGAATGGATGAGTCGGTTTTCTTCCATAACCAATACCCAATGATGGATTCATCAACAATCACATCATCTCCATCACCATGGCCGCAGATTCTTGATGATATTGACTTCAACCAAATCCAAGAGTCCTTCTCTTCAGCTTCATCCCCAAAGAGCTACACCTCAAACAAGCGCTTCAACTCTTCTTCCGCCGCCGGAACCACCATGCCACAAAGCTCTTTCTCACCAATTGAAAGACCAACTAAGCAACAAAAAAATGCTTATAGCCATGGGATTAGTACTAATACCACTACTACTACCAGCAATGAATTCATGGTTCCCAAAGCTTCTTCCTCTTCTTCTTCCCAAATCATCTCGTTCGAGCAGCACTCGAACGCTTCTTCTTCGGTTGCTTCCTATAACCACCGTCATCAGCAACTCTACAATAATAACCCTTCTTCAGATCAGGGTAACCATGTTTTGAGGCCCAAGACTGAGAGTGTGTGCAGTGAGAATTTGGATTTTGCCACTGTGGTTTCTCATGCTGATTACCTGAGTGGTTATGATAAGGCCAATAAAGGTTCCGCGGCGGCGGCCACCACCAGAAACCCAACTCAGGCCCAAGATCACGTCATTGCCGAAAGAAAACGAAGGGAGAAGCTCAGCCAGAGGTTCATTGCACTTTCCGCCATTGTTCCTGGACTCAAGAAGATGGACAAGGCTTCTGTATTGGGAGATGCTATCAAATATCTGAAGCAACTGCAAGAAAAAGTGAAGATTCTAGAAGAGCAAGTTGCTGAAAAAACCGTCGAATCCGCAATTTTTGTGAAGAGATCCATCCTCTTCGCAGAAGACAATGGATCTTCTTCGGAGGAGAACCCGGATCAGAAAATCCCGGAGATAGAAGCAAGAATTTCAGGCAAAGACGTTCTCATTAGAATCCACTGTGACAAACACAGTGGAATAGTGCCAAAAATAATCAACGAGATTGAGAAGCATGATCTCAGTGTTCAAAGTAGTAGCTTCTTGCCCTTTGGCAACAACTCACTTGACATCACCATTGTTGCTCAGATGAAGAAGGAATGTACATTGACAGCAAAAGATATAATAAAAGGCTTAAATCAGACTTTGAAGCAGCTGAGTTGA 1164 0.4373 MMQISSTNKYLPEFGMDESVFFHNQYPMMDSSTITSSPSPWPQILDDIDFNQIQESFSSASSPKSYTSNKRFNSSSAAGTTMPQSSFSPIERPTKQQKNAYSHGISTNTTTTTSNEFMVPKASSSSSSQIISFEQHSNASSSVASYNHRHQQLYNNNPSSDQGNHVLRPKTESVCSENLDFATVVSHADYLSGYDKANKGSAAAATTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQVAEKTVESAIFVKRSILFAEDNGSSSEENPDQKIPEIEARISGKDVLIRIHCDKHSGIVPKIINEIEKHDLSVQSSSFLPFGNNSLDITIVAQMKKECTLTAKDIIKGLNQTLKQLS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01200 387 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983
Adu01g01200 387 PANTHER BHLH TRANSCRIPTION FACTOR 7 386 - -
Adu01g01200 387 MobiDBLite consensus disorder prediction 59 121 - -
Adu01g01200 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 278 IPR036638 GO:0046983
Adu01g01200 387 SMART finulus 217 266 IPR011598 GO:0046983
Adu01g01200 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
Adu01g01200 387 Coils Coil 250 277 - -
Adu01g01200 387 Gene3D - 203 275 IPR036638 GO:0046983
Adu01g01200 387 CDD bHLH_AtNAI1_like 213 285 - -
Adu01g01200 387 PANTHER TRANSCRIPTION FACTOR NAI1 7 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01200 Adu-Chr1 23995213 23997955 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01200 199 383 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.403 9.87e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu01g01200 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01200 - - adu:107482661 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01200 01 23995213 23997955 Adu01g01200 01 23995213 23997955 ECH
Adu05g00532 05 5657098 5658754 Adu01g01200 01 23995213 23997955 PCT