Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01165 ATGGGTCTTCATCATGATTCTACTCATAATAATAACAACTCAGGCCTTCATCTTGTTCTAGGGTTGGCTCTGAGTTCCTCCTCTGATTCACCAACACAAGAAACCATAACTACCTCTACTAAGATCCCGCCGTACTCCTCTTCCTCCACCGTAACAACCGATGATGCTGAATTGCTATTACCGTCTCTTACTTTAGCTCTCTCCGGTCACGATGTGAACAAAAATAAAAACGATGATCCGCAAGAGCACCATAGGGTCCAGGTAGTCCCTACCAAGGCTAACAACAATAAGGTCTACAGTAGTGAGGACTACCCTTCTACTGGTGACGTGTCGGCACAGAATTCGCCTCACCACAGCGCCGTTTCGTCTTTCTCCAGCGGCTGCAGAAGAGGAGTCAAGAGAGAGAGGGATAAGCAGAAGCAAGCTTTAGCGATGCAATTGAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTAGATTGCGAGTTCCTAAAGAAGTGTTGTGAGACACTAACAGATGAGAATAGAAGGCTACAGAAAGAGCTTCAAGAGCTTAAGGCACTCAAACTGTCTCAGCCTTTGTACATGCCTCCCATGCCCGCCGCGACACTCACCATCTGCCCTTCTTGCGACCGGGCCGTTGCCATTGGCAGCGGTGGCAGCGCTTCCAATAACATCAAGAATACTCCTTTGATCTCCTTGGCCCCCAAGCCTCACCACTTCTTTAGTCCCTTCACCAATCCTTCCGCAGCATGTTGA 798 0.4912 MGLHHDSTHNNNNSGLHLVLGLALSSSSDSPTQETITTSTKIPPYSSSSTVTTDDAELLLPSLTLALSGHDVNKNKNDDPQEHHRVQVVPTKANNNKVYSSEDYPSTGDVSAQNSPHHSAVSSFSSGCRRGVKRERDKQKQALAMQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMPPMPAATLTICPSCDRAVAIGSGGSASNNIKNTPLISLAPKPHHFFSPFTNPSAAC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01165 265 ProSitePatterns 'Homeobox' domain signature. 143 166 IPR017970 GO:0000981|GO:0006355
Adu01g01165 265 CDD homeodomain 137 169 IPR001356 GO:0003677
Adu01g01165 265 MobiDBLite consensus disorder prediction 26 48 - -
Adu01g01165 265 Coils Coil 174 204 - -
Adu01g01165 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 138 265 - -
Adu01g01165 265 Gene3D - 96 164 - -
Adu01g01165 265 MobiDBLite consensus disorder prediction 96 140 - -
Adu01g01165 265 Pfam Homeodomain 138 166 IPR001356 GO:0003677
Adu01g01165 265 SMART halz 168 211 IPR003106 GO:0006355|GO:0043565
Adu01g01165 265 PANTHER - 138 265 - -
Adu01g01165 265 SUPERFAMILY Homeodomain-like 138 169 IPR009057 -
Adu01g01165 265 SMART HOX_1 113 172 IPR001356 GO:0003677
Adu01g01165 265 MobiDBLite consensus disorder prediction 96 126 - -
Adu01g01165 265 Pfam Homeobox associated leucine zipper 168 202 IPR003106 GO:0006355|GO:0043565
Adu01g01165 265 ProSiteProfiles 'Homeobox' domain profile. 138 168 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01165 Adu-Chr1 21898532 21900740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01165 138 265 Homeobox Transcription Factor Family AT4G37790 73.846 6.78e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Adu01g01165 HALZ 7.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01165 K09338 - mnt:21391159 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00545 05 5834618 5836006 Adu01g01165 01 21898532 21900740 PCT