Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01133 ATGCGGTGCAGGACATGCTGCAAGAGCCGTGGCTTCGATTGCCAAACCCATGTGAAGAGCACTTGGGTTCCCGCTTCCAAGCGCCGCGAGAGGCAGCAACAACTCACCTCTATCCAACAACAACTTCTTGCTGCTGATGTTCTCAAGCGCCAAAGAGATCATGCCtggtggctggcagcagcagaggtggaagacgaaggatga 204 0.4412 MRCRTCCKSRGFDCQTHVKSTWVPASKRRERQQQLTSIQQQLLAADVLKRQRDHAWWLAAAEVEDEG 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01133 67 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 1 28 IPR006510 -
Adu01g01133 67 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 54 IPR007818 GO:0003700|GO:0006355
Adu01g01133 67 Pfam Domain of unknown function (DUF702) 1 48 - -
Adu01g01133 67 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01133 Adu-Chr1 20106228 20106431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01133 1 53 C2H2 Transcription Factor Family AT5G66350 75.926 7.42e-24 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Adu01g01133 DUF702 7.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01133 - - adu:107462205 121.324