Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01125 ATGGGTGAAAGGTGTGACTTTCTTGAAGAAATCTCCACAAAAAGAGCAGATTGGATCATTAAGGTTTATGTTGTAAGGATGTGGTATGGTCCTCCACGCCCAAATAGTAGTGAAGCTGGTGCTTTAGAGATTGCATTGCACGACTTGAAGGGCAGCAGGATACACTGCACGATTCCAAAATCAGTGGTGCGACTGTTCCGGCCCATTCTGTCGGAGGGGCAGCTATATAGTATTTCTTCTTTTATAGTCCAAAAGAACAATATGTGGATGAAGTGCAGCTCGCTTCAGTATAGGATCACCTTATTACAAAGAAGCATGGTTGTTCATATCCCTCAACTGCTCTTTCCGTTTCAGCCATTTACATTTAGGAGTATTGCGTCTATCCTGCAAGAAGAAAGGCTTGATCAGAATTTTCTTTTTGATGTGCTAGCAGAGGTTATAGGGAAGGAGGACCCAAAGGATTTGGTTACCAAGCAAGGGCAGGAAAGCAAGCGGTTAGGGCTGTTAGTGGAGGACCTTGATTTGGTGGACAGCACTCAAGGTGATAGTTGTTTTTCATCCCAGAGGATAAGTCATATGTCATCCAGTTCATATCGATCTGCTATTGATGAGCTCAGAAAAGGGATCTGCAAAGTTGAAACAATAGACAGTGTGTTGAATGCAAGTGATGTTGGGTTTAAATGGATACTATGTACGATTGTTGACTTTGATGTCGGGAGGAATGATTGGTTCTTCATAGCTTGCAAGTATTGTCATAAAAAATGCAAAAAGATAGAGGAGAGATTTGAATGTGACCATTGCCGCAAGAAGGCCGTTCAGGTAGACTTGCGGTATAAGCTTCAAGCTTATGTTTCCGATGCAACTGGAAGTATGTGTGTAGTGTTGTGGGATACCGAAGCAAGCCAAATTGTAGGGTTGAGTGCAAACAAAGTCAGAGAAACCTACAGTCAGGATGATTCTGATGATTCTTACCCGGAGGTGCTGAAGACGGCCTTGGACATGAAGTTGCTATTAAGGATTAATGTAAAAAGTAGTCATTTGAGTGGTAATGAGAACGTGTACAATGTCACAAAAGCTTGCTATGATGAGCACCTTATCCATAAATACAGCCAGTCTGTAAATGAACAATCTACGAAGAACCAGTCTATTGGATATTGCAGGGGTTGGATAATGTTACTAGCTTGGATTGTACTACTGATGTTGTTTATCTTGGTGATGATGAATCTGTCCAAGGAATCTGTCAATGAGTCTAAGACAGTTACCAGCAGCAAGGGAAGAGCTAAAAGGATTGATGCAGGAATTATAGGAGTAGTTGCGAAAGACTTGGAAAGTATACCCGTAGGGCAGTTGTCAAGTACTAAGAAGCCAAGTGCTGATATGGCTTGCAAGTCCGAGACACAAACAGATGTTGCTGCAGCTGTTCACACCCCTGAATTTCTCAATGGTCTCAAGTCTTCCGGTCTTCCAAACCACGAAATCAAATTGAAGGTTGGTATACCGATTATGCTTCTTAGAAACATTGATCATTCTTCGGGTTTATGCAATGGGACACGTTTGATTGTTACTCAGCTTGGGAAACGAATTATTGAAGCCAAAGTAATTACTGGTAATAATGCAGGACAAAAAGTGTTCATACCACGTATGAACCTGTCCCCTTCTGATCATAGGATCCCCTTTAAATTTAATCGAAGACAGTTTCCTATAATGGTTTCCTATGCTATGACCATAAATAAGAGTCAAGGTCAATCGTTATCTAATGTGAGCTTACTTTTAAGGAAGCCTGTTTTTAGCCACGGTCAACTGTACGTGGCTCTTTCTCGAGTAACAACTAGACAAGGTCTCAAGATACTAATTTCTAATGAAGCAGGAAAAGAGTCAACTGTGACTGATAATGTTGTCTATAATGAAGTTTTTAGAAATCTGGATTGA 1929 0.4101 MGERCDFLEEISTKRADWIIKVYVVRMWYGPPRPNSSEAGALEIALHDLKGSRIHCTIPKSVVRLFRPILSEGQLYSISSFIVQKNNMWMKCSSLQYRITLLQRSMVVHIPQLLFPFQPFTFRSIASILQEERLDQNFLFDVLAEVIGKEDPKDLVTKQGQESKRLGLLVEDLDLVDSTQGDSCFSSQRISHMSSSSYRSAIDELRKGICKVETIDSVLNASDVGFKWILCTIVDFDVGRNDWFFIACKYCHKKCKKIEERFECDHCRKKAVQVDLRYKLQAYVSDATGSMCVVLWDTEASQIVGLSANKVRETYSQDDSDDSYPEVLKTALDMKLLLRINVKSSHLSGNENVYNVTKACYDEHLIHKYSQSVNEQSTKNQSIGYCRGWIMLLAWIVLLMLFILVMMNLSKESVNESKTVTSSKGRAKRIDAGIIGVVAKDLESIPVGQLSSTKKPSADMACKSETQTDVAAAVHTPEFLNGLKSSGLPNHEIKLKVGIPIMLLRNIDHSSGLCNGTRLIVTQLGKRIIEAKVITGNNAGQKVFIPRMNLSPSDHRIPFKFNRRQFPIMVSYAMTINKSQGQSLSNVSLLLRKPVFSHGQLYVALSRVTTRQGLKILISNEAGKESTVTDNVVYNEVFRNLD 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01125 642 Gene3D - 6 109 IPR012340 -
Adu01g01125 642 Pfam Replication factor-A C terminal domain 240 352 IPR013955 -
Adu01g01125 642 Pfam Domain of unknown function DUF223 44 108 IPR003871 -
Adu01g01125 642 SUPERFAMILY Nucleic acid-binding proteins 225 360 IPR012340 -
Adu01g01125 642 CDD RPA1_DBD_A_like 20 99 - -
Adu01g01125 642 CDD SF1_C_RecD 560 614 - -
Adu01g01125 642 Pfam PIF1-like helicase 457 524 IPR010285 GO:0000723|GO:0003678|GO:0006281
Adu01g01125 642 PANTHER DNA HELICASE-RELATED 405 641 - -
Adu01g01125 642 Gene3D - 192 370 IPR012340 -
Adu01g01125 642 PANTHER ATP-DEPENDENT DNA HELICASE 405 641 - -
Adu01g01125 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 640 IPR027417 -
Adu01g01125 642 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01125 Adu-Chr1 19741313 19744862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01125 244 342 Core DNA Replication Machinery Family AT5G08020 31.000 4.40e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01125 - K15255 ahf:112780340 473.396