Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01096 ATGAGTTGCAACGGTTGCCGAGTTCTCCGAAAGGGTTGCAGCGAGACATGCATGTTGCGCCCTTGCTTGCAGTGGATCGAGACACCCGAGGCCCAAGGACACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCTTTCATTTCCAATGTACCGGAGGCCCAAAGACCCGCTCTGTTTCAGTCACTGCTGTTTGAAGCATGTGGAAGAACCGTGAATCCGGTTAATGGTGCTGTGGGGCTCTTGTGGACGGGGAACTGGCACGTGTGCCAGGCGGCAGTGGAGACGGTGCTCCGCGGAGGCACGTTGAGGCCCTCGCCGGAGTTTATGGGGATGGAATCGGCGGGTCCGGTGGTGGCCACCGACGAAGCATCGGAGGCAGAGGTCACGTGCGGTGACATATGGAAGAAGGTTCGAGATCCGAACCCGAGTTGCAGGTTCACAAGCTCACGGTCTACACGTGTTGCTGCAGGCGCCGCCGGGAAGTGTAAGCGGCTGGAGGAGGTGACGAAGGTCCAGACGGCGGCTGATCTTGATCTTCGTCTGACGCCGATCTTCCTTCAGAAGATCGCCGATTACCGGCGCCGTCCGGGATCGCCGTCGATGACGTCGGAGGAGTCCGTGACGACCACGGCGGAGATTGGAGGAGATCAGTGGGGTCACAGCGGTGAACGGAAAGTTCTCAACCTTTTCATTTGA 711 0.5963 MSCNGCRVLRKGCSETCMLRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPSPEFMGMESAGPVVATDEASEAEVTCGDIWKKVRDPNPSCRFTSSRSTRVAAGAAGKCKRLEEVTKVQTAADLDLRLTPIFLQKIADYRRRPGSPSMTSEESVTTTAEIGGDQWGHSGERKVLNLFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01096 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Adu01g01096 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Adu01g01096 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Adu01g01096 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01096 Adu-Chr1 18550908 18552332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01096 1 236 AS2 family AT4G37540 57.540 1.85e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Adu01g01096 LOB 4.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01096 - - gmx:100816480 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00601 05 6644273 6645672 Adu01g01096 01 18550908 18552332 ECH
Adu01g01096 01 18550908 18552332 Adu01g01096 01 18550908 18552332 ECH
Adu01g01096 01 18550908 18552332 Adu05g00601 05 6644273 6645672 PCT