Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01079 ATGTATTTTCCTTTAGGAATAATTAGAGTATCTTTGTCTTGGATAAGGCTTCTTATTTGTTCAATTATGTGTTGGGGACCTTTCCTTCTTTTATGGTTTAGTTTTGAATTGCAGGCCTTGGACTACTGCCATTCACAAGGCATCATGCATAGAGACGTCAAGCCTCATAATGTTATGATAGATCATGAATTACGAAAACTTCGATTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTTCGTGTGGCATCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGGAAGGAGCCTTTCTTTTATGGTCATGACAATCATGATCAGCTTGTCAAAATAGCCAAGGTACTTGGGACTGATGAATTGAATGCATACCTGAATAAGTATCACCTGGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGCAAACCTTGGTCAAAATTCATCAATGCAGATAACCAGCATCTTGTGTCTCCAGAGGCTATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCACATCCATATTTCTCTCAGGTAAGAGCTGCAGAAAGTAGCAGAATGCGGACACAGTAA 705 0.4057 MYFPLGIIRVSLSWIRLLICSIMCWGPFLLLWFSFELQALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01079 234 CDD STKc_CK2_alpha 37 220 IPR045216 GO:0004674|GO:0006468
Adu01g01079 234 SMART serkin_6 2 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu01g01079 234 Gene3D Transferase(Phosphotransferase) domain 1 37 221 - -
Adu01g01079 234 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 36 234 - -
Adu01g01079 234 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu01g01079 234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Adu01g01079 234 SUPERFAMILY Protein kinase-like (PK-like) 36 224 IPR011009 -
Adu01g01079 234 Pfam Protein kinase domain 37 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu01g01079 234 PANTHER CASEIN KINASE II SUBUNIT ALPHA 36 234 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01079 Adu-Chr1 17863358 17867904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01079 33 227 Core Cell Cycle Gene Families AT2G38620 32.487 3.98e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Adu01g01079 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01079 K03097 - gmx:100813528 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu01g01079 01 17863358 17867904 Adu01g01079 01 17863358 17867904 ECH
Adu05g00607 05 6776767 6784829 Adu01g01079 01 17863358 17867904 PCT