Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01040 ATGGGACATGAATCCCGAAAGCTCTTGGATGAATATGAGGTGTCAGAGATTCTAGGAAGAGGTGGATTCTCTGTTGTTAGGAAAGGCATAAAAAAATCAAGCAGTGATGAGAAAACTCATGTTGCCATAAAGACACTAAGAAGAGTAAGTGCCTCTACTACGACCCCTGGTTGTTTACCAAGAGAGAGGAGCAACATGGGGTTTCCCACATGGAGACAGGTTTCAGTATCAGATGCTCTTCTCACCAATGAGATCCTTGTGATGAGGAAGATAGTCGAAAATGTGTCGCCACATCCGAATGTGGTTGACCTCTATGATGTTTATGAGGACTCGAATGGTGTTCATCTTGTTTTGGAGCTGTGTTCTGGCGGTGAGCTGTTTGATCGCATTGTGGCACAGGATAGGTACTCAGAGACTGAGGCTGCGACAGTTATTCGCCAGATTGCGGCGGGCTTAGAGGCTATTCATAAAGCAAACATTGTCCATAGAGACTTGAAGCCTGAGAATTGCTTGTTCTTGGACAAGAGGAAGGATTCTCCTCTAAAGATCATGGATTTCGGTTTGAGCTCTGTTGAAGAGTTTACTGATCCAGTTGTTGGTTTGTTTGGTTCCATTGATTATGTTTCACCGGAGGCACTTTCTCAAGGAAAGATAACAGCTAAGAGTGACATGTGGTCTCTAGGGGTAATTTTGTACATCTTATTATCTGGATATCCGCCTTTCATTGCTCAGTCTAATCGCCAAAAACAACAAATGATAATGAATGGGAACTTTAGCTTCTATGAGAAGACATGGAAGGGCATTTCTCAATCAGCAAAGCAATTGATTTCGAGTCTTCTGACAGTTGATCCTATTAGGAGACCTAGTGCGCAGGAGCTCCTGAGTCATCCATGGGTCATAGGTGATGTAGCGAAAGATGATCAGATGGACCCTGAGATTGTCTCAAGGTTGCAAAGCTTCAATGCTCGTCGCAAGCTCCGGGCAGCTGCAATTGCAAGCGTATGGAGCACCACAGTGTTCTTGAGAACCAAGAAACTGAAATCCTTGATAGGATCCTATGATCTTACAGAAGAGGAAATTGAAAATCTTAGGATACACTTCAAGAAGATATGTGGAAATGGGGACAATGCCACGCTCTCTAAGTTTGAGGAGGTACTGAAAGCAATAAATATGCCATCACTAATTCCTCTAGCACCACGCATATTTGACTTGTTCGACAACAACCGTGATGGAACGGTTGACATGCGAGAGATTTTATGTGGGCTTTCCAGCCTCAAGAATTCCAAAGGAGATGATGCCCTCCGTTTGTGCTTCCAGATGTATGATGCAGATCGATCCGGGTGTATCACAAAGGAAGAAGTAGCATCCATGCTTAGAGCTTTGCCGGATGACTGTCTTCCCGTTGATATCACGGAACCTGGCAAATTGGACGAGATTTTCGACAGAATGGATGCCAACAGTGATGGAAAAGTCACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGATAGCTCCCTCCAAGATGTAGTCCTTTCTTCCCTTCGCCCACTATAG 1554 0.4427 MGHESRKLLDEYEVSEILGRGGFSVVRKGIKKSSSDEKTHVAIKTLRRVSASTTTPGCLPRERSNMGFPTWRQVSVSDALLTNEILVMRKIVENVSPHPNVVDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAATVIRQIAAGLEAIHKANIVHRDLKPENCLFLDKRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITAKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGISQSAKQLISSLLTVDPIRRPSAQELLSHPWVIGDVAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSTTVFLRTKKLKSLIGSYDLTEEEIENLRIHFKKICGNGDNATLSKFEEVLKAINMPSLIPLAPRIFDLFDNNRDGTVDMREILCGLSSLKNSKGDDALRLCFQMYDADRSGCITKEEVASMLRALPDDCLPVDITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRPL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01040 517 SMART serkin_6 12 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu01g01040 517 CDD EFh 434 501 IPR002048 GO:0005509
Adu01g01040 517 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
Adu01g01040 517 Gene3D Transferase(Phosphotransferase) domain 1 128 342 - -
Adu01g01040 517 Gene3D Phosphorylase Kinase; domain 1 5 127 - -
Adu01g01040 517 Gene3D - 343 510 - -
Adu01g01040 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Adu01g01040 517 Pfam EF-hand domain pair 432 501 IPR002048 GO:0005509
Adu01g01040 517 ProSitePatterns Protein kinases ATP-binding region signature. 18 44 IPR017441 GO:0005524
Adu01g01040 517 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Adu01g01040 517 SMART efh_1 433 461 IPR002048 GO:0005509
Adu01g01040 517 SMART efh_1 397 425 IPR002048 GO:0005509
Adu01g01040 517 SMART efh_1 475 503 IPR002048 GO:0005509
Adu01g01040 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 8 501 - -
Adu01g01040 517 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 8 501 - -
Adu01g01040 517 ProSitePatterns EF-hand calcium-binding domain. 406 418 IPR018247 -
Adu01g01040 517 PRINTS Recoverin family signature 355 374 - -
Adu01g01040 517 PRINTS Recoverin family signature 401 422 - -
Adu01g01040 517 PRINTS Recoverin family signature 425 444 - -
Adu01g01040 517 PRINTS Recoverin family signature 491 511 - -
Adu01g01040 517 SUPERFAMILY EF-hand 343 507 IPR011992 -
Adu01g01040 517 SUPERFAMILY Protein kinase-like (PK-like) 6 321 IPR011009 -
Adu01g01040 517 ProSiteProfiles EF-hand calcium-binding domain profile. 393 428 IPR002048 GO:0005509
Adu01g01040 517 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Adu01g01040 517 CDD STKc_CAMK 12 298 - -
Adu01g01040 517 CDD EFh 400 459 IPR002048 GO:0005509
Adu01g01040 517 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Adu01g01040 517 Pfam EF hand 402 417 IPR002048 GO:0005509
Adu01g01040 517 ProSiteProfiles Protein kinase domain profile. 12 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu01g01040 517 Pfam Protein kinase domain 12 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01040 Adu-Chr1 16246495 16252531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01040 90 504 EF-hand Containing Proteins AT3G10660 37.589 2.63e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Adu01g01040 Pkinase 1.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g01040 K13412 - gmx:732616 903.664