Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu01g01024 | ATGTCTCCCACAACTCCCTCCCTTCTCGACACCCTCCTCTGCCAAGAAGAACACGACGACACCTTTGACGACACCCAAAACGACGCGTCGTTCCACCTCAACGACAACCACCACGACGAATCACCGTCGTTTTGCCCCGCAAAGCTCCAATCTTTTCCTCATCCCGTTCTGCATGACAACGACCTGTTCTGGGAACACGACGAGCTCGCCTCCTTAATCTCCAAAGAGGAAGAGACCCACGCCGCCGCTGGTAACGACGACGACCACCGTGGACTTCTAGATGGGCTTCGAGTTGGGCCCGTTGGCTGGATCACTAACGTGTGTGCGCACTATGGGTTTTCAGCTTTGACCACCGTTCTCGCCGTTAACTACTTCGACAGGTTCGTCACGAGCCTCACGTTTCAAAGGGATAAGCCATGGATGACTCAGTTAACGGCGGTTGCGTGCTTGTCAATCGCTGCAAAGATGGAAGAGACACATGTGCCCCTCCTCTTAGACCTCCAAGTGGAAGAATCGAGGTTTGTGTTTGAAGCAAAGACAATACAAAGAATGGAGCTTCTTGTGTTGTCTACTCTCAAATGGAAGATGCATCCGGTGACCCCAATTTCTTTTTTTGAACACATTGTAAGAAGGCTTGGCCTCAAGAGTCGCTTGCATTGGGAATTTCTATGGCGGTGCCAGCGGGTTCTTCTTGGCGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCATCTACATTGGCTGCTGCTACGATGATCCATGTTATTAAAGAGATTGAGCCATTTAATGCAACTAAGTACATTAGTGAACTTCTGGGACTACTCAAGATTAGTGAGGAACAAGGGAACCAGTGCTACAAACTCTTGCTGAAATCATTAGTTTGTGAAGAAGGTATTACTGACGGTCTTCACCAGATGCACAAGCGCAAGCGCAAGCGCGAATCTGCCCCGAGTAGCCCAGGAGGTGTCATTGATGCTTCTTTCAGTTGTGATAGCTCAAACGATTTGTGGGCCGTTGCGGCATCGTCGGTTTCACATTCGATGGAGCCGCTGTTTAAGAGGAGCAGAGCTAAGGACCAGCAGATGAGACTGCCTTCTGTTAGTCGCGTGTCTATCGATGTTCTTAATAGCCCTCATTAA | 1140 | 0.4947 | MSPTTPSLLDTLLCQEEHDDTFDDTQNDASFHLNDNHHDESPSFCPAKLQSFPHPVLHDNDLFWEHDELASLISKEEETHAAAGNDDDHRGLLDGLRVGPVGWITNVCAHYGFSALTTVLAVNYFDRFVTSLTFQRDKPWMTQLTAVACLSIAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWKMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCQRVLLGVIADSRVMSYLPSTLAAATMIHVIKEIEPFNATKYISELLGLLKISEEQGNQCYKLLLKSLVCEEGITDGLHQMHKRKRKRESAPSSPGGVIDASFSCDSSNDLWAVAASSVSHSMEPLFKRSRAKDQQMRLPSVSRVSIDVLNSPH | 379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu01g01024 | 379 | PANTHER | CYCLIN-D3-2 | 39 | 363 | - | - | |
| Adu01g01024 | 379 | SUPERFAMILY | Cyclin-like | 63 | 197 | IPR036915 | - | |
| Adu01g01024 | 379 | Pfam | Cyclin, N-terminal domain | 72 | 196 | IPR006671 | - | |
| Adu01g01024 | 379 | PANTHER | CYCLINS | 39 | 363 | IPR039361 | - | |
| Adu01g01024 | 379 | Gene3D | - | 198 | 287 | - | - | |
| Adu01g01024 | 379 | CDD | CYCLIN | 96 | 189 | IPR013763 | - | |
| Adu01g01024 | 379 | SMART | cyclin_7 | 102 | 190 | IPR013763 | - | |
| Adu01g01024 | 379 | Pfam | Cyclin, C-terminal domain | 199 | 297 | IPR004367 | - | |
| Adu01g01024 | 379 | Gene3D | - | 95 | 197 | - | - | |
| Adu01g01024 | 379 | SMART | Cyclin_C_2 | 199 | 321 | IPR004367 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu01g01024 | Adu-Chr1 | 15536340 | 15538536 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu01g01024 | 61 | 369 | Core Cell Cycle Gene Families | AT5G67260 | 50.955 | 3.79e-101 | 303 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu01g01024 | K14505 | - | gmx:100785030 | 499.59 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Adu05g00636 | 05 | 7195143 | 7197012 | Adu01g01024 | 01 | 15536340 | 15538536 | ECH | |
| Adu08g01021 | 08 | 18365159 | 18366693 | Adu01g01024 | 01 | 15536340 | 15538536 | ECH | |
| Adu06g03152 | 06 | 109741558 | 109743846 | Adu01g01024 | 01 | 15536340 | 15538536 | ECH | |
| Adu01g01024 | 01 | 15536340 | 15538536 | Adu01g01024 | 01 | 15536340 | 15538536 | ECH | |
| Adu01g01024 | 01 | 15536340 | 15538536 | Adu05g00636 | 05 | 7195143 | 7197012 | PCT |