Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00932 ATGTCATCATCGGAGGCGGGCTACAAAACGCCCGACGGAGAATACAATACCCCCCCGGCGTTAATAGCATTCACGTTAGCCGTCCTAGTGTTATGCTTCATGGCCTTCAGCGTTGTGTACTTGTGCAAGTACTGCTTTGTAAGCGTCCTCCACTCTTGGGCCTTCCACCAGAGTTTCTCTGGTTCATTGCTTCGTCCTTCATCAACAAATAGGTCTTCCTCAATAGGCCTTGATCCTTCCATGCTTCAAACGTTCCCAACCTTTGTGTATTCCTCCGTAAAGGACCTCCGCAGCCTAGAATGTGCCATTTGCTTGCTCGAATTCCAGGACGACAGCTTGATTCGCCTCTTGACTATTTGCTGCCATGTTTTCCACCAAGAATGCATTGACCTTTGGCTTTATTCCCACAAGACTTGCCCTGTTTGCCGCACAAACCTCGAGGAGCATAAATCAGGAGAAGGAGAAATCAGTGGTAGCAGTGGTGGTGCTGACATACGCATTGACATAATAACAGACATGGCCACCCAAGGTAGTGGGGGTCATCAGGGTACAGGAGGAGAGGATCATTCGTGTAATGACGAACATGATCATAATAATAATGGGGTGCAGCAAGAACACAAGTTTGCAAGGTCACACTCAACGGGCCATTCCATAGTTTTTAGAGGAGAAGAAGAAGAAAAAGATGATAAATATACCTTGAGGCTGCCTCAACACATTATAAGAGGGCGGCACCACTATTCTAAGAGTTGTACAAGTTTTCAAGAGATGCAGATGACGACTTCGACTAGGCCTTGTAGTAATTGCGGCTTTGTTGAATCTGCGATCAGACCATCAAGTAATCATCTATCTGGTATCCATCAGCAATCAAGTACGTTGAGCTGTTGCGGATATGGCACTGAGCAACAATGTGATAGGAGGCATCAACTTAGGGGCGGTGCTGCTGTCGATTCCAATAATTGGGACCGGGATATGGCTGAGCACAGAGGTAGCGGAATCGTGTGTGAAGGTTCTAGAATGGGCGGTGCTTATGTTGGGGATTGTGATGATGGTGGTGGGTCTGGCGGGATTGGCGGGAGCATTATTGTGGAGAGTCCAGCAGGTGAGGGTGATGATATTCTACCTGGTAGCCATGCTGGTGCTAATCGTGTTGCTGCTGTGCCTGGTGGTGTTGGTGTACACGGTCACCCTTAG 1191 0.4819 MSSSEAGYKTPDGEYNTPPALIAFTLAVLVLCFMAFSVVYLCKYCFVSVLHSWAFHQSFSGSLLRPSSTNRSSSIGLDPSMLQTFPTFVYSSVKDLRSLECAICLLEFQDDSLIRLLTICCHVFHQECIDLWLYSHKTCPVCRTNLEEHKSGEGEISGSSGGADIRIDIITDMATQGSGGHQGTGGEDHSCNDEHDHNNNGVQQEHKFARSHSTGHSIVFRGEEEEKDDKYTLRLPQHIIRGRHHYSKSCTSFQEMQMTTSTRPCSNCGFVESAIRPSSNHLSGIHQQSSTLSCCGYGTEQQCDRRHQLRGGAAVDSNNWDRDMAEHRGSGIVCEGSRMGGAYVGDCDDGGGSGGIGGSIIVESPAGEGDDILPGSHAGANRVAAVPGGVGVHGHP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00932 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
Adu01g00932 396 PANTHER RING-H2 FINGER PROTEIN ATL29 8 256 - -
Adu01g00932 396 SUPERFAMILY RING/U-box 82 149 - -
Adu01g00932 396 SMART ring_2 101 142 IPR001841 -
Adu01g00932 396 CDD RING-H2_EL5_like 100 143 - -
Adu01g00932 396 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Adu01g00932 396 MobiDBLite consensus disorder prediction 176 200 - -
Adu01g00932 396 Pfam Ring finger domain 100 143 IPR001841 -
Adu01g00932 396 PANTHER RING FINGER DOMAIN-CONTAINING 8 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00932 Adu-Chr1 12488613 12492318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00932 19 249 Rapid Response to Elicitors AT2G35000 33.469 1.02e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00932 - - ahf:112732715 479.559