Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00921 ATGGATGAGAAAGCTAAGTCCTCAGATCATGTTGCTGTCATCATTGACCAGCACACTAACCATCCGAAACCCCCTTCCTCCTCCTCCGTGGACAACAAGCCCCCCAAACAACACCCCTTGAGGGTCAAAACCCTTAACCGTCTCAGCTTCTCGAAGCCCAAATCCAGAATCCTCGAGTACAATAACTACTATCCCCACCACCATCTCGGCAGAAAGCTATCAAGCATTTCCCAGGAGAACAACAACGACAATAATAATGAGGACGTGGACGAAGACGAAGAGGAAGAGGAGGAGTGGTGGGACGAAGAAGAAGAGATCGAGGAGGAGGGTGAGGGAGAGAGGAATAAGTTGCAGGAGAGGAGGAGGAGGAAGAAGGTGAGGTGGAGGGTAGTGGTGGAGTGGGTGGTGTTCCTGAGCATAGCAACATGCTTGGTTTGTTCGCTGGTAATAACGCGGATAAAGAAGATGCACATGGTGGGTTTGGAGATATGGAAGTGGTGCTTGATGGTGATGGTGACATTCAGCGGGAGGTTGGTGTCGGGGTGGGTGGTGGGGGTGACGGTGTTCGTGATAGAGAGGAACTTCATGCTGAGAGAGAAGGTGCTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCCTGTGGCTAGGGCTGGTGCTTCTTTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAAGAACCACAAGTTCCTGAACAAGGTGTTTCAGGCACTGGTCGCAGTGCTGGTTGGGGCCATCATATGGCTCGTCAAGATTGTTCTCGTGAAGATGCTGGCATCCTCTTTTCACGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACACTCTCTCAGGTCCACCCATGGAGGACGCGGAGGAGATACTGCAGCAGCACCGCCAGCTCACGGGGGGCGGCTCAAAGTCGATGCCTGCCAGGAGTAGGTTGAATAAGCTAAAGGAGAAGCAGCAGCAGGAGAGGTTTGGGGGGTCCAGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACTGCCTCCGCCTGGAGCGTCAAGAGGCTCGTCAACTATGTTCGCTCCTCCGGCCTCTCCACCATCTCCAGGACCGTGGATGATTTCGCCACCGCCGAGTCTGAGATCAACAGTGAATGGGAAGCTAGAAACTGCGCTCAGCGGATTTTCAACAACGTCGCCAAACCTGCTGCCAAGTACATTGAAGAGGAGGATTTGATGAGATTTCTGAAGAGGGTTGAGATACATACTATATTCCCTCTCTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGATCATCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAGGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTAGCAAGCGCGATAGTGAGTGTGATAATAATCATTGTGATCCTTCTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACGCAAATCGTGTTGATTGGGGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCATCCTTTCGACATTGGAGACCGCTGCGTCATTGACGGTGTTCATATGATCGTGGAAGAGATGAATATCTTGTCAACAGTGTTTCTTAGATACGACAACGAGAAAATATACTACCCAAATGCAGTTCTGCTGAATAAGCCAATCAGCAATTTCTACAGGAGTCCAGAGATGTGGGACTCAATTGATTTCACCATTGATGCTTCTACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATTTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGTTGTGCTTGTGTGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATCACTGAGCTCCTCCTGGAACTCAAAAAGATCTTTGAGATCCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCAGATGAACATGGAAAATAATAATATTAATAATGGCAGACTTGTCTTTCAATCATGA 2151 0.4863 MDEKAKSSDHVAVIIDQHTNHPKPPSSSSVDNKPPKQHPLRVKTLNRLSFSKPKSRILEYNNYYPHHHLGRKLSSISQENNNDNNNEDVDEDEEEEEEWWDEEEEIEEEGEGERNKLQERRRRKKVRWRVVVEWVVFLSIATCLVCSLVITRIKKMHMVGLEIWKWCLMVMVTFSGRLVSGWVVGVTVFVIERNFMLREKVLYFIYGLRKSIRNCLWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHRQLTGGGSKSMPARSRLNKLKEKQQQERFGGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFATAESEINSEWEARNCAQRIFNNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILSTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDASTPMETIIALKKSIQIYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITQMNMENNNINNGRLVFQS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00921 716 SUPERFAMILY Sm-like ribonucleoproteins 532 590 IPR010920 -
Adu01g00921 716 MobiDBLite consensus disorder prediction 84 110 - -
Adu01g00921 716 MobiDBLite consensus disorder prediction 312 332 - -
Adu01g00921 716 PIRSF Memb_At2g17000 2 713 IPR016688 -
Adu01g00921 716 Gene3D - 541 590 IPR023408 -
Adu01g00921 716 MobiDBLite consensus disorder prediction 1 48 - -
Adu01g00921 716 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 707 IPR016688 -
Adu01g00921 716 MobiDBLite consensus disorder prediction 75 117 - -
Adu01g00921 716 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 707 - -
Adu01g00921 716 Pfam Mechanosensitive ion channel 482 685 IPR006685 GO:0016020|GO:0055085
Adu01g00921 716 MobiDBLite consensus disorder prediction 20 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00921 Adu-Chr1 12372140 12377656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00921 23 701 Mechanosensitive Ion Channel Family AT5G12080 43.509 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00921 K22048 - gmx:100813521 1003.43