Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g00875 ATGACTCGCATGCTAAGAATCCTCCAATCCGCCACCGCCAACAACGCCACCACTACCACCGCCATAGCTGCTGCCGTGCCACCGGCCGAGGCAGCCTCAGTCGAGTCCGACTTCGTCGTCATCCTCGCTGCGCTGCTCTGCGCACTCATCTGCGTCGTCGGCCTCATCGCCGTCGCACGATGCGCCTGGCTCCGCCGCGTCCCCGTCGCAGGCACCGGAGCATCTCCACATCAGGCACTCGCCAACCGTGGACTCAAGAAGAAGGTACTCAACTCGTTACCAAAATTCACCTACGTCGACGGCGACGGCGCCGGTGCCGGTAACGGTGCTGACGCCGGCGTCCGGAGGAAGTGGACAGCCTCATCGGAATGCTCAATTTGTCTGGCGGAATTCGCCGCCGGCGACGAGGTCAGGGTGCTTCCGCAGTGTGGCCATGGCTTCCACGTGGCATGTATTGACACGTGGCTGGGATCACACTCCTCCTGCCCGTCCTGCCGCGCCGTCCTGGCCGTTGGGAGATGCCAAAAATGCGGCCAGTTTCCGGCCGTTCCAAACGGCGCTACCGTAGTAGCAATTGCCGGCGAAACAGAATTAAAATCTGTCGTCGGCAACAGCAATGGTAACGCCGGAAGTAATAGCCGGCATGCTAGCAATGATTTCTTGCCTTAA 669 0.6084 MTRMLRILQSATANNATTTTAIAAAVPPAEAASVESDFVVILAALLCALICVVGLIAVARCAWLRRVPVAGTGASPHQALANRGLKKKVLNSLPKFTYVDGDGAGAGNGADAGVRRKWTASSECSICLAEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAVLAVGRCQKCGQFPAVPNGATVVAIAGETELKSVVGNSNGNAGSNSRHASNDFLP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g00875 222 SUPERFAMILY RING/U-box 123 170 - -
Adu01g00875 222 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Adu01g00875 222 SMART ring_2 124 165 IPR001841 -
Adu01g00875 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 171 IPR013083 -
Adu01g00875 222 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 209 - -
Adu01g00875 222 Pfam Ring finger domain 123 166 IPR001841 -
Adu01g00875 222 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 23 209 - -
Adu01g00875 222 SMART FANCL_C_2 120 174 - -
Adu01g00875 222 MobiDBLite consensus disorder prediction 203 222 - -
Adu01g00875 222 CDD RING-H2_PA-TM-RING 123 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g00875 Adu-Chr1 11614920 11616037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g00875 1 177 C3H Transcription Factor Family AT1G76410 55.801 7.69e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu01g00875 - - adu:107487390 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00317 05 3372910 3374069 Adu01g00875 01 11614920 11616037 PCT